prot_L-elsbetiae_contig1839.5333.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1839.5333.1
Unique Nameprot_L-elsbetiae_contig1839.5333.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length149
Homology
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BLAST of mRNA_L-elsbetiae_contig1839.5333.1 vs. uniprot
Match: D7FKN3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKN3_ECTSI)

HSP 1 Score: 251 bits (640), Expect = 1.440e-83
Identity = 130/146 (89.04%), Postives = 135/146 (92.47%), Query Frame = 0 
Query:    1 MAPVGRVIGGLVAVCACFAPAADAFLSGVALPSSRAGVARGGTGALEMAKHRQNKGTKKHVKNRPRKSRPSDINRAPTNYSIEINTNGNFPGAPPVFELESEPEEGIDTKASVIEALASAEWDAEQAAKPAVDASKEMEVVMGGSW 146
            MAPVGRV+GGLV VCAC APA DAF +GVALPSSRAG ARGG GALEMAKHRQNKGTKKHVKNRPRKSR SD NR PT+YSIE+NTNGNFPGAPPVFELESEPEEGIDTKASVIEALASAEWDAEQAAKPAVD SKEMEV+MGG W
Sbjct:    1 MAPVGRVVGGLVVVCACLAPATDAFFTGVALPSSRAGAARGGNGALEMAKHRQNKGTKKHVKNRPRKSRLSDRNRKPTDYSIEVNTNGNFPGAPPVFELESEPEEGIDTKASVIEALASAEWDAEQAAKPAVDESKEMEVIMGGDW 146
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BLAST of mRNA_L-elsbetiae_contig1839.5333.1 vs. uniprot
Match: A0A836CBS4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.240e-14
Identity = 41/71 (57.75%), Postives = 48/71 (67.61%), Query Frame = 0 
Query:   33 SSRAGVARGGTGALEMAKHRQNKGTKKHVKNRPRKSRPSDINRAPTNYSIEINTNG-NFPGAPPVFELESE 102
            S RA V R   G L MAKH Q KG KKH KNRP+KS PSD N  P  YS+EI +NG ++PG PPV+E+  E
Sbjct:   33 SQRAAV-RSSRGVLHMAKHAQAKGAKKHQKNRPKKSNPSDRNHKPAEYSLEIMSNGRDYPGKPPVYEIVEE 102
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BLAST of mRNA_L-elsbetiae_contig1839.5333.1 vs. uniprot
Match: A0A7J7IK92_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IK92_9RHOD)

HSP 1 Score: 50.8 bits (120), Expect = 1.650e-5
Identity = 25/35 (71.43%), Postives = 28/35 (80.00%), Query Frame = 0 
Query:   48 MAKHRQNKGTKKHVKNRPRKSRPSDINRAPTNYSI 82
            MAKH   K TKKHVK RPRKSRPSDIN  PT+Y++
Sbjct:    1 MAKHPIPKATKKHVKRRPRKSRPSDINHKPTHYAL 35
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BLAST of mRNA_L-elsbetiae_contig1839.5333.1 vs. uniprot
Match: A0A7S2XKJ3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XKJ3_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 7.220e-5
Identity = 24/32 (75.00%), Postives = 25/32 (78.12%), Query Frame = 0 
Query:   49 AKHRQNKGTKKHVKNRPRKSRPSDINRAPTNY 80
            AKH Q K TKKH   RP+KSRPSDINR PTNY
Sbjct:   49 AKHVQKKATKKHADRRPKKSRPSDINRKPTNY 80
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BLAST of mRNA_L-elsbetiae_contig1839.5333.1 vs. uniprot
Match: A0A022R8V1_ERYGU (Uncharacterized protein n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022R8V1_ERYGU)

HSP 1 Score: 48.9 bits (115), Expect = 8.170e-5
Identity = 35/72 (48.61%), Postives = 39/72 (54.17%), Query Frame = 0 
Query:   25 FLSGVALPSSRAGVA---------------RGGTG-ALEMAKHRQNKGTKKHVKNRPRKSRPSDINRAPTNY 80
            F S V LP S A VA                GGTG  +E +   Q KGTK H+K RPRK+R SDI RAPTNY
Sbjct:    7 FGSRVVLPPSSAAVATKAIAPPQRLAVGGGHGGTGLVIECSSRPQKKGTKHHMKTRPRKTRLSDIRRAPTNY 78
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1839.5333.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FKN3_ECTSI1.440e-8389.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBS4_9STRA3.240e-1457.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7J7IK92_9RHOD1.650e-571.43Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A7S2XKJ3_9STRA7.220e-575.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A022R8V1_ERYGU8.170e-548.61Uncharacterized protein n=2 Tax=Erythranthe guttat... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020526Ribosomal protein L6, chloroplastPFAMPF17257DUF5323coord: 47..81
e-value: 1.7E-9
score: 37.4
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..148
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..24
NoneNo IPR availablePRODOMPD069352coord: 40..97
e-value: 0.002
score: 94.0
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..17
score: 5.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..24
score: 0.589
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1839contigL-elsbetiae_contig1839:7849..13604 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1839.5333.1mRNA_L-elsbetiae_contig1839.5333.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1839 6917..13622 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1839.5333.1 ID=prot_L-elsbetiae_contig1839.5333.1|Name=mRNA_L-elsbetiae_contig1839.5333.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
MAPVGRVIGGLVAVCACFAPAADAFLSGVALPSSRAGVARGGTGALEMAK
HRQNKGTKKHVKNRPRKSRPSDINRAPTNYSIEINTNGNFPGAPPVFELE
SEPEEGIDTKASVIEALASAEWDAEQAAKPAVDASKEMEVVMGGSWGA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020526Ribosomal_L6_chp