prot_L-elsbetiae_contig18379.5328.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig18379.5328.1
Unique Nameprot_L-elsbetiae_contig18379.5328.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length172
Homology
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BLAST of mRNA_L-elsbetiae_contig18379.5328.1 vs. uniprot
Match: A0A6H5KY37_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY37_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.560e-34
Identity = 73/132 (55.30%), Postives = 91/132 (68.94%), Query Frame = 0 
Query:    2 CDPADMERRRRDCLALFGRCLDVSDGAAY--GGVT----GVEVGHFGELRDHFVRQFCDHLACDSHNRPLAPRWEGKGAARRHPIPGGVGDGRSGMGMPKMFIIAVLVVGLIILYSTMALGHWSRRTQKDLR 127
            CDPADMERRRR C ALF  C D S+G+A   GGV     G E G  G + D+FVRQFC+HLACD H+RPLAP  +G  A  RHP+P G  DG  G G P++F+IAV+V+GL+I Y++MA+   S  T+ DLR
Sbjct:  156 CDPADMERRRRRCRALFHGCFDDSNGSAGSDGGVVDAGPGRETGDSGSIGDYFVRQFCNHLACDDHHRPLAPPVDGGPANHRHPLPHGGVDG-VGTGKPRVFLIAVVVIGLVIFYASMAVRLRSTSTRHDLR 286
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BLAST of mRNA_L-elsbetiae_contig18379.5328.1 vs. uniprot
Match: D7FXP7_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP7_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.500e-6
Identity = 32/56 (57.14%), Postives = 35/56 (62.50%), Query Frame = 0 
Query:    2 CDPADMERRRRDCLALFGRCLDVSDGAAY--GGVT----GVEVGHFGELRDHFVRQ 51
            CDPADMERRRR C ALF  C D S G+A   GG+     G E G FG   D+FVRQ
Sbjct:  156 CDPADMERRRRRCRALFHGCFDDSTGSAGSDGGIVDAGPGRETGGFGSTGDYFVRQ 211
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18379.5328.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KY37_9PHAE1.560e-3455.30C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FXP7_ECTSI1.500e-657.14C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 96..118
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 119..171
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..95
NoneNo IPR availableTMHMMTMhelixcoord: 96..118

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18379contigL-elsbetiae_contig18379:1141..2358 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18379.5328.1mRNA_L-elsbetiae_contig18379.5328.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig18379 1062..2681 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig18379.5328.1 ID=prot_L-elsbetiae_contig18379.5328.1|Name=mRNA_L-elsbetiae_contig18379.5328.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
MCDPADMERRRRDCLALFGRCLDVSDGAAYGGVTGVEVGHFGELRDHFVR
QFCDHLACDSHNRPLAPRWEGKGAARRHPIPGGVGDGRSGMGMPKMFIIA
VLVVGLIILYSTMALGHWSRRTQKDLRHLSHAPRSFRRREEIGSNEGDSG
RSTSIRGSSALHRRGLNRGLG*
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