prot_L-elsbetiae_contig18364.5326.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig18364.5326.1
Unique Nameprot_L-elsbetiae_contig18364.5326.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length178
Homology
BLAST of mRNA_L-elsbetiae_contig18364.5326.1 vs. uniprot
Match: A0A7S1XVH2_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVH2_9STRA)

HSP 1 Score: 200 bits (508), Expect = 8.960e-61
Identity = 101/182 (55.49%), Postives = 125/182 (68.68%), Query Frame = 0
Query:    1 DRGFGHASVLKTFAVDLRDIAGKGSVPAAVAR--LKFCNVKPGSGSGGDG--GPASKLHEGLGWDGLPMVGSWVNPGDALYCVVDGLTGKVTVGKHKESEKACVETVRALGAEGVERPGSGLTRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPSEDMPFTESGLSPDIIINPHAFPSRM 178
            +RGFGHASV K   V+L D   KGS      R  L+F N++      G+   G   K+++ L  DGLP VG+WV  GD LYC +D ++G+   GKHKE+E+AC++ VR LG            R S+TLRFPRNP+IGDKFSSRHGQKGVMSILWP EDMPF+ESG++PD+IINPHAFPSRM
Sbjct:  105 ERGFGHASVYKAKIVNLEDEEKKGSQNRDGGRPSLRFGNLRRTPAEPGNPLIGGEQKIYDNLDADGLPAVGTWVQEGDPLYCTIDSVSGEAHAGKHKETERACIQDVRLLGPADQRSGNEECRRVSMTLRFPRNPIIGDKFSSRHGQKGVMSILWPQEDMPFSESGITPDVIINPHAFPSRM 286          
BLAST of mRNA_L-elsbetiae_contig18364.5326.1 vs. uniprot
Match: A0A7S3UTQ0_HETAK (DNA-directed RNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTQ0_HETAK)

HSP 1 Score: 204 bits (518), Expect = 2.790e-60
Identity = 107/178 (60.11%), Postives = 129/178 (72.47%), Query Frame = 0
Query:    1 DRGFGHASVLKTFAVDLRDIAGKGSVPAAVARLKFCNVKPGSGSGGDGGPASKLHEGLGWDGLPMVGSWVNPGDALYCVVDGLTGKVTVGKHKESEKACVETVRALGAEGVERPGSGLTRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPSEDMPFTESGLSPDIIINPHAFPSRM 178
            DRGF HA+V KT   DL  +A +G   A    ++F N  PG   GG     +K+   LG DGLP VG+WV PGD L C VD L+G+ TV KHK++E A V+ VR LGAEG   P + LTR S+TLR+PRNP+IGDKFSSRHGQKGV+SILWP E+MPFTESG++PD+IINPHAFPSRM
Sbjct:  110 DRGFAHAAVYKTKTYDL--LAERGG-SAKRGHVRFANRAPGDKEGG-----AKIEPSLGEDGLPHVGAWVKPGDPLLCHVDDLSGEKTVVKHKDTETAVVQDVRLLGAEG-GLPQADLTRVSLTLRYPRNPIIGDKFSSRHGQKGVLSILWPQENMPFTESGMTPDVIINPHAFPSRM 278          
BLAST of mRNA_L-elsbetiae_contig18364.5326.1 vs. uniprot
Match: A0A835YVF9_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF9_9STRA)

HSP 1 Score: 209 bits (532), Expect = 2.120e-59
Identity = 105/178 (58.99%), Postives = 127/178 (71.35%), Query Frame = 0
Query:    1 DRGFGHASVLKTFAVDLRDIAGKGSVPAAVARLKFCNVKPGSGSGGDGGPASKLHEGLGWDGLPMVGSWVNPGDALYCVVDGLTGKVTVGKHKESEKACVETVRALGAEGVERPGSGLTRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPSEDMPFTESGLSPDIIINPHAFPSRM 178
            +RGF HASV+KT  +DL+D+  K      V +++F N      + G GG   KL+E L  DGLP +G+ V  GD LYC +D  T K   GKHKESE A VETVRA+G  G+ +    + +AS+TLRFPRNP+IGDKFSSRHGQKGVMSILWP  DMPFTESG++PDIIINPHAFPSRM
Sbjct:  779 ERGFAHASVVKTIKIDLKDLLTKSDSKTMVGKMRFTNTA----ADGKGG---KLYENLDNDGLPRIGACVKEGDPLYCAIDLRTNKTKTGKHKESEMAYVETVRAVGGAGINK--EAMAKASMTLRFPRNPIIGDKFSSRHGQKGVMSILWPQSDMPFTESGMTPDIIINPHAFPSRM 947          
BLAST of mRNA_L-elsbetiae_contig18364.5326.1 vs. uniprot
Match: A0A7S4JAV2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JAV2_9STRA)

HSP 1 Score: 204 bits (518), Expect = 1.760e-57
Identity = 119/212 (56.13%), Postives = 133/212 (62.74%), Query Frame = 0
Query:    1 DRGFGHASVLKTFAVDLRDIA------GKGSVPAAVARLKFCNV--KPGSGSGG--------------DGGPASKLHEGLGWDGLPMVGSWVNPGDALYCVVDGLTGKVTVGKHKESEKACVETVRALGAEGVERP------GSGLTRA------SITLRFPRNPVIGDKFSSRHGQKGVMSILWPSEDMPFTESGLSPDIIINPHAFPSRM 178
            +RGFGHASV KT  VDLRD A      G G   +  ARLKF N+  KP                    +   A  LH  L  DGLPM G WV+ GDALYCVVD LTGK  VG+HKE EKACV+ VR LG+    +       G G + A      S+TLRFPRNPVIGDKFSSRHGQKGVMSILWP  DMPF+ESG+SPD+IINPHAFPSRM
Sbjct:  851 ERGFGHASVYKTMTVDLRDKAEHMGAKGGGCDGSGEARLKFSNILKKPEXXXXXXXXXXXXXXXXXKVEKNAAPWLHRTLDEDGLPMPGEWVSEGDALYCVVDTLTGKDNVGRHKEKEKACVQCVRKLGSASAGQSMNSKSGGRGSSSAVPDEKISLTLRFPRNPVIGDKFSSRHGQKGVMSILWPQVDMPFSESGISPDVIINPHAFPSRM 1062          
BLAST of mRNA_L-elsbetiae_contig18364.5326.1 vs. uniprot
Match: A0A7S3V7B4_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7B4_9STRA)

HSP 1 Score: 202 bits (515), Expect = 4.410e-57
Identity = 110/190 (57.89%), Postives = 127/190 (66.84%), Query Frame = 0
Query:    1 DRGFGHASVLKTFAVDLRDIAG------KGSVPAAVARLKFCN-----VKPGSGSGGDGGPASKLHEGLGWDGLPMVGSWVNPGDALYCVVDGLTGKVTVGKHKESEKACVETVRALGAEGVERPGSGLTR-ASITLRFPRNPVIGDKFSSRHGQKGVMSILWPSEDMPFTESGLSPDIIINPHAFPSRM 178
            +RGFGHASV KT  VD++D A       KG  P    R+KF N      K  S +GG G     L+  LG DGLP VG+WV+ GD +YCVVD LTG+   GKHKE EKAC++ VR LG     +         SITLR PRNPVIGDKFSSRHGQKGV+SILWP  DMPF+ESG+SPD+IINPHAFPSRM
Sbjct:  829 ERGFGHASVYKTMKVDIKDEAERAGSDTKGDKP----RMKFGNKTVRRAKDPSAAGGIGTTDEVLYPNLGEDGLPEVGTWVDEGDPIYCVVDELTGRTRPGKHKEKEKACIQQVRLLGQPSASKDKVNRDDIVSITLRIPRNPVIGDKFSSRHGQKGVLSILWPQTDMPFSESGISPDVIINPHAFPSRM 1014          
BLAST of mRNA_L-elsbetiae_contig18364.5326.1 vs. uniprot
Match: W7TET2_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TET2_9STRA)

HSP 1 Score: 197 bits (500), Expect = 4.600e-55
Identity = 110/189 (58.20%), Postives = 120/189 (63.49%), Query Frame = 0
Query:    1 DRGFGHASVLKTFAVDLR-DIAGKGS----------VPAAVARLKFCNVKPGSGSGGDGGPASKLHEGLGWDGLPMVGSWVNPGDALYCVVDGLTGKVTVGKHKESEKACVETVRALGAEGVERPGSGLTRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPSEDMPFTESGLSPDIIINPHAFPSRM 178
            DRG   A V KT +V LR D+ G              PA VA+ +F            G     L E L  DGLP+VG+WV  GD LY  VD LTG+V VGKHKESE ACVE VR LG EG       L   SITLRFPR P+IGDKFSSRHGQKGV+SILWP EDMPFTESG+SPDIIINPHAFPSRM
Sbjct:  831 DRGMAAADVYKTKSVSLRRDMRGGPKRPDLRFSNLRTPAVVAKRQF-----------PGRVGDPLFEKLEADGLPVVGTWVKEGDVLYSAVDSLTGEVEVGKHKESEVACVEAVRLLGLEGTSGATEPLDTVSITLRFPRRPIIGDKFSSRHGQKGVLSILWPQEDMPFTESGMSPDIIINPHAFPSRM 1008          
BLAST of mRNA_L-elsbetiae_contig18364.5326.1 vs. uniprot
Match: A0A6U3PLE0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3PLE0_9STRA)

HSP 1 Score: 196 bits (499), Expect = 6.340e-55
Identity = 112/199 (56.28%), Postives = 130/199 (65.33%), Query Frame = 0
Query:    1 DRGFGHASVLKTFAVDLRDIA---GKGSVPAAVARLKFCNV---KPGSGSG-GDGGPASKLHEG-----LGWDGLPMVGSWVNPGDALYCVVDGLTGKVTVGKHKESEKACVETVRALG-----AEGVER----PGSGLTRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPSEDMPFTESGLSPDIIINPHAFPSRM 178
            +RGFGHASV KT  VDLR+ A   G  +     +R+KF N    K  SGS  G     S + EG     +G DGLP VG+WV  GD LYCV+D LTG     KHKE E ACV++VR LG     +   +R    P     + SITLR PRNPVIGDKFSSRHGQKGV+SILWP EDMPF+ESG+SPD+IINPHAFPSRM
Sbjct:  855 ERGFGHASVYKTMQVDLREEAERRGSSTASGEKSRVKFGNKTIKKFASGSAAGSSSKGSSITEGFLYPNIGEDGLPEVGTWVKEGDPLYCVIDELTGADFAAKHKEKESACVQSVRLLGEHISHSTTTQRQKMAPSQQDQKVSITLRIPRNPVIGDKFSSRHGQKGVLSILWPQEDMPFSESGISPDVIINPHAFPSRM 1053          
BLAST of mRNA_L-elsbetiae_contig18364.5326.1 vs. uniprot
Match: A0A7R9U7R0_9STRA (DNA-directed RNA polymerase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7R0_9STRA)

HSP 1 Score: 189 bits (479), Expect = 8.880e-54
Identity = 97/188 (51.60%), Postives = 126/188 (67.02%), Query Frame = 0
Query:    1 DRGFGHASVLKTFAVDLRDIAGKGSV--PAAVARLKFCNVKPG--------SGSGGDGGPASKLHEGLGWDGLPMVGSWVNPGDALYCVVDGLTGKVTVGKHKESEKACVETVRALGAEGVERPGSGLTRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPSEDMPFTESGLSPDIIINPHAFPSRM 178
            +RGF HAS+ KT  ++L D   K +         L+F N +P         S +  D  P  K++E L +DGLP VG W+   D LYC+++   G+  V KHK+ E+ACV+T+R LG++G  +    L R S+TLR PRNP+IGDKFSSRHGQKGVMS+LWP EDMPF+ESG+SPD+IINPHAFPSRM
Sbjct:  185 ERGFAHASIYKTKIINLDDEEEKAASLEDGTKPTLRFGNTRPTNFATEVSPSVAIADVSPVRKIYEELDFDGLPHVGQWLEQDDPLYCLLNTTNGESHVTKHKDVERACVQTIRLLGSDGKNK--DKLRRVSVTLRIPRNPIIGDKFSSRHGQKGVMSVLWPQEDMPFSESGISPDVIINPHAFPSRM 370          
BLAST of mRNA_L-elsbetiae_contig18364.5326.1 vs. uniprot
Match: A0A7S2W2W3_9STRA (DNA-directed RNA polymerase subunit beta (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W2W3_9STRA)

HSP 1 Score: 187 bits (476), Expect = 7.200e-52
Identity = 102/188 (54.26%), Postives = 123/188 (65.43%), Query Frame = 0
Query:    1 DRGFGHASVLKTFAVDLRDIAGKGSVPAAVA-RLKFCNVKPGSGSGGDGGPAS---------KLHEGLGWDGLPMVGSWVNPGDALYCVVDGLTGKVTVGKHKESEKACVETVRALGAEGVERPGSGLTRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPSEDMPFTESGLSPDIIINPHAFPSRM 178
            +RG+ HASV KT  VDL++       P + A +L+F N    S  G +  P S         K    LG+DG P VG+WVN GD +  +VD  TG V   KHKE EKAC++ VR LG  G +    G  + S+TLRFPRNPVIGDKF+SRHGQKGVMSILWP  DMPF+ESG+SPD+IINPHAFPSRM
Sbjct:  686 ERGYKHASVYKTVHVDLKEENKMACKPGSDAPKLRFGNKSRKSKRGPE--PDSDDETESDDGKFFSNLGFDGFPEVGTWVNEGDKICSMVDENTGNVEGVKHKEKEKACIQAVRLLGQPGSKSGSEGNEKVSLTLRFPRNPVIGDKFASRHGQKGVMSILWPQVDMPFSESGISPDVIINPHAFPSRM 871          
BLAST of mRNA_L-elsbetiae_contig18364.5326.1 vs. uniprot
Match: A0A7S2V1Y1_9STRA (DNA-directed RNA polymerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Y1_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.850e-51
Identity = 94/179 (52.51%), Postives = 116/179 (64.80%), Query Frame = 0
Query:    3 GFGHASVLKTFAVDLRDIAGKGSVPAAVARLKFCNVKPGSGSGGDGGPASKLHEGLGWDGLPMVGSWVNPGDALYCVVDGLTGKVTVGKHKESEKACVETVRALGAEGVERPGSGL---TRASITLRFPRNPVIGDKFSSRHGQKGVMSILWPSEDMPFTESGLSPDIIINPHAFPSRM 178
            GF H  V KT  VDL D   +       + + F N KP      DG   +K+ E L  DGLP VGSWV  GD LY  +D  + ++  GKHK+ EKACV+ +R L  +   +  +G+   T    TLR+PRNP+IGDKFSSRHGQKGV+SILWP EDMPFTESG++PD+IINPHAFPSRM
Sbjct:    1 GFAHGCVYKTQTVDLSDRGRR-------SNIHFTNKKP------DG---TKVSEQLDEDGLPRVGSWVKEGDPLYATIDEDSQEIHTGKHKDMEKACVQDIRVLTGKVAAQETAGIGGVTYMRYTLRYPRNPIIGDKFSSRHGQKGVLSILWPQEDMPFTESGMTPDVIINPHAFPSRM 163          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig18364.5326.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1XVH2_9STRA8.960e-6155.49DNA-directed RNA polymerase (Fragment) n=1 Tax=Pha... [more]
A0A7S3UTQ0_HETAK2.790e-6060.11DNA-directed RNA polymerase n=1 Tax=Heterosigma ak... [more]
A0A835YVF9_9STRA2.120e-5958.99DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S4JAV2_9STRA1.760e-5756.13DNA-directed RNA polymerase subunit beta n=1 Tax=O... [more]
A0A7S3V7B4_9STRA4.410e-5757.89DNA-directed RNA polymerase subunit beta n=1 Tax=C... [more]
W7TET2_9STRA4.600e-5558.20DNA-directed RNA polymerase subunit beta n=2 Tax=M... [more]
A0A6U3PLE0_9STRA6.340e-5556.28DNA-directed RNA polymerase subunit beta n=1 Tax=D... [more]
A0A7R9U7R0_9STRA8.880e-5451.60DNA-directed RNA polymerase n=1 Tax=Pinguiococcus ... [more]
A0A7S2W2W3_9STRA7.200e-5254.26DNA-directed RNA polymerase subunit beta (Fragment... [more]
A0A7S2V1Y1_9STRA1.850e-5152.51DNA-directed RNA polymerase n=1 Tax=Fibrocapsa jap... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 117..178
e-value: 4.9E-25
score: 90.5
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainPFAMPF00562RNA_pol_Rpb2_6coord: 53..178
e-value: 1.1E-31
score: 110.3
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 1..178
NoneNo IPR availablePANTHERPTHR20856:SF5DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2coord: 1..178
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..178
IPR007121RNA polymerase, beta subunit, conserved sitePROSITEPS01166RNA_POL_BETAcoord: 134..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig18364contigL-elsbetiae_contig18364:100..798 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig18364.5326.1mRNA_L-elsbetiae_contig18364.5326.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig18364 100..798 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig18364.5326.1 ID=prot_L-elsbetiae_contig18364.5326.1|Name=mRNA_L-elsbetiae_contig18364.5326.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=178bp
DRGFGHASVLKTFAVDLRDIAGKGSVPAAVARLKFCNVKPGSGSGGDGGP
ASKLHEGLGWDGLPMVGSWVNPGDALYCVVDGLTGKVTVGKHKESEKACV
ETVRALGAEGVERPGSGLTRASITLRFPRNPVIGDKFSSRHGQKGVMSIL
WPSEDMPFTESGLSPDIIINPHAFPSRM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037033DNA-dir_RNAP_su2_hyb_sf
IPR007120DNA-dir_RNAP_su2_dom
IPR015712DNA-dir_RNA_pol_su2
IPR007121RNA_pol_bsu_CS