prot_L-elsbetiae_contig183.5302.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig183.5302.1
Unique Nameprot_L-elsbetiae_contig183.5302.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length131
Homology
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BLAST of mRNA_L-elsbetiae_contig183.5302.1 vs. uniprot
Match: D8LKG0_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG0_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 6.070e-13
Identity = 49/126 (38.89%), Postives = 58/126 (46.03%), Query Frame = 0 
Query:    1 MQYEDSTGCLWTEEQDADGYVYYVNTSTMETAWELPPSIREVVSSALVPLQDTSSSWTEVFDESTNSTXXXXXXXXXXXXXLGTDDRLASGIYHSLDGDETDVGEQYGTSQDQEGEESTSSSWRDQ 126
            MQYEDS G LW EEQD DG VY+VN  TME++W+                                               LGTD+RLASGIYH   GD+  +   Y +SQ  E E S SSSWRD+
Sbjct:    1 MQYEDSKGDLWVEEQDDDGDVYFVNADTMESSWD-----------------------------------------------LGTDERLASGIYHPSGGDDDALIGPYSSSQTLEAESSISSSWRDE 79
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig183.5302.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKG0_ECTSI6.070e-1338.89WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001202WW domainSMARTSM00456ww_5coord: 52..85
e-value: 0.05
score: 22.7
coord: 6..38
e-value: 4.7E-5
score: 32.8
IPR001202WW domainPFAMPF00397WWcoord: 11..36
e-value: 1.5E-7
score: 31.4
coord: 56..81
e-value: 3.2E-7
score: 30.3
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 11..38
score: 11.27
IPR001202WW domainPROSITEPS50020WW_DOMAIN_2coord: 51..81
score: 9.753
NoneNo IPR availableGENE3D2.20.70.10coord: 57..82
e-value: 3.3E-7
score: 31.9
NoneNo IPR availableGENE3D2.20.70.10coord: 5..46
e-value: 3.2E-10
score: 41.1
NoneNo IPR availablePANTHERPTHR11864:SF0PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST)coord: 44..81
NoneNo IPR availablePANTHERPTHR11864:SF0PRP40 PRE-MRNA PROCESSING FACTOR 40 HOMOLOG A (YEAST)coord: 8..41
IPR039726Pre-mRNA-processing factor Prp40PANTHERPTHR11864PRE-MRNA-PROCESSING PROTEIN PRP40coord: 8..41
coord: 44..81
IPR036020WW domain superfamilySUPERFAMILY51045WW domaincoord: 7..37
IPR036020WW domain superfamilySUPERFAMILY51045WW domaincoord: 48..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig183contigL-elsbetiae_contig183:38349..41238 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig183.5302.1mRNA_L-elsbetiae_contig183.5302.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig183 34626..41238 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig183.5302.1 ID=prot_L-elsbetiae_contig183.5302.1|Name=mRNA_L-elsbetiae_contig183.5302.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
MQYEDSTGCLWTEEQDADGYVYYVNTSTMETAWELPPSIREVVSSALVPL
QDTSSSWTEVFDESTNSTYFFNTSTQESSWDLGTDDRLASGIYHSLDGDE
TDVGEQYGTSQDQEGEESTSSSWRDQASGQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001202WW_dom
IPR039726Prp40-like
IPR036020WW_dom_sf