prot_L-elsbetiae_contig1821.5260.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1821.5260.1
Unique Nameprot_L-elsbetiae_contig1821.5260.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length68
Homology
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BLAST of mRNA_L-elsbetiae_contig1821.5260.1 vs. uniprot
Match: D7FK70_ECTSI (tRNA-splicing endonuclease positive effector n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK70_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 3.430e-22
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 0 
Query:    2 EVAMQGGSFASAALGMSYCNRRETEAVVFAMELRLGEADVQAEDVTIITPYSAQVRLFQDLVSSSRR 68
            E A+QGGSFASAALG SYCN RE EAV FA+EL L E DV+AEDV IITPYSAQVRL QD+V +SRR
Sbjct:  607 EAAVQGGSFASAALGTSYCNVREAEAVAFALELLLREGDVEAEDVGIITPYSAQVRLLQDVVGTSRR 673
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BLAST of mRNA_L-elsbetiae_contig1821.5260.1 vs. uniprot
Match: A0A6H5L473_9PHAE (AAA_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L473_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.200e-8
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 0 
Query:    2 EVAMQGGSFASAALGMSYCNRRETEAVVFAMELRLGEADVQ 42
            E A+QGGSFASAALG SYCN RE EAV FA+EL L E DV+
Sbjct:  587 EAAVQGGSFASAALGTSYCNLREAEAVAFALELLLREGDVE 627
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1821.5260.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK70_ECTSI3.430e-2276.12tRNA-splicing endonuclease positive effector n=1 T... [more]
A0A6H5L473_9PHAE1.200e-873.17AAA_11 domain-containing protein n=1 Tax=Ectocarpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 3..68
e-value: 5.4E-8
score: 34.3
IPR041679DNA2/NAM7 helicase-like, AAA domainPFAMPF13087AAA_12coord: 17..65
e-value: 3.7E-7
score: 29.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1821contigL-elsbetiae_contig1821:11326..12251 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1821.5260.1mRNA_L-elsbetiae_contig1821.5260.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1821 11326..12263 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1821.5260.1 ID=prot_L-elsbetiae_contig1821.5260.1|Name=mRNA_L-elsbetiae_contig1821.5260.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=68bp
MEVAMQGGSFASAALGMSYCNRRETEAVVFAMELRLGEADVQAEDVTIIT
PYSAQVRLFQDLVSSSRR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041679DNA2/NAM7-like_AAA