prot_L-elsbetiae_contig1807.5188.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1807.5188.1
Unique Nameprot_L-elsbetiae_contig1807.5188.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length271
Homology
BLAST of mRNA_L-elsbetiae_contig1807.5188.1 vs. uniprot
Match: D8LB47_ECTSI (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB47_ECTSI)

HSP 1 Score: 341 bits (874), Expect = 3.140e-104
Identity = 190/243 (78.19%), Postives = 204/243 (83.95%), Query Frame = 0
Query:   13 ARPAHPGTGLPRGATLIVAPTKEAARRWSDRLESVTAADGGGLSVLGYVMPLRERRRLSAKQTASFDVVVTTYDVLKAKEVPRGVEAKEATSPRSWALPGSTQWRTTRNAKGEGGAAGHGKPAASKTDHMVSLLHGVWWDRVVADGAQLLGTQRSARAVAALALVGTARWCVVERESMAAVESASEKMRCLAAFLRVPAEVAMVQAAEKLFYRSRPGHIAPLHPRRPAGAADNSLSLLSKGDA 255
            AR  H GTGLP G TLI+APTKEAA RWSDRLES      GGLSVL YVMPLRERRRLSAKQ A+FDVVVTTYDVLKAKEVPRGVEAKEATSPRSWALPGSTQWRT RNAK EGG       A+SKTDHMVSLLHGVWWDRVVADGAQ+L TQRSARAVAALAL+GTARWC+V+ ESM+ VE ASE+MRCLAAFLRVPA V +V+ AE L +RSRP HIAPL+PR P GAADNSLSL    D+
Sbjct: 1154 ARRIHTGTGLPCGPTLILAPTKEAAWRWSDRLES----GSGGLSVLNYVMPLRERRRLSAKQVAAFDVVVTTYDVLKAKEVPRGVEAKEATSPRSWALPGSTQWRT-RNAK-EGGQKR--TSASSKTDHMVSLLHGVWWDRVVADGAQILATQRSARAVAALALMGTARWCLVDCESMSIVEDASERMRCLAAFLRVPAAVPLVEVAESLLFRSRPRHIAPLYPRAP-GAADNSLSLTEGDDS 1387          
BLAST of mRNA_L-elsbetiae_contig1807.5188.1 vs. uniprot
Match: A0A6H5KIY1_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY1_9PHAE)

HSP 1 Score: 326 bits (836), Expect = 6.000e-99
Identity = 185/257 (71.98%), Postives = 199/257 (77.43%), Query Frame = 0
Query:   13 ARPAHPGTGLPRGATLIVAPTKEAARRWSDRLESVTAADGGGLSVLGYVMPLRERRRLSAKQTASFDVVVTTYDVLKAKEVPRGVEAKEATSPRSWALPGSTQWRTTRNAKGEGGAAGHGKPAASKTDHMVSLLHGVWWDRVVADGAQLLGTQRSARAVAALALVGTARWCVVERESMAAVESASEKMR--------------CLAAFLRVPAEVAMVQAAEKLFYRSRPGHIAPLHPRRPAGAADNSLSLLSKGDA 255
            AR  H GTGLP G+TLI+APTKEAA RWSDRLES      GGLSVL YVMPLRERRRLSAKQ A+FDVVVTTYDVLKAKEVPRGVEAKEATSPRSWALPGSTQWRT RN K  G        +AS TDHMVSLLHGVWWDRVVADGAQ+L TQRSARAVAAL L GTARWC+V+ ESM+ VE AS++MR              CLAAFLRVPA V +V  AE LF+RSRP HIAPL+PR P GAADNSLSL    D+
Sbjct: 1152 ARRTHNGTGLPCGSTLILAPTKEAAWRWSDRLES----GSGGLSVLSYVMPLRERRRLSAKQVAAFDVVVTTYDVLKAKEVPRGVEAKEATSPRSWALPGSTQWRT-RNGKEAGQK--RSSSSASMTDHMVSLLHGVWWDRVVADGAQILATQRSARAVAALTLAGTARWCLVDCESMSIVEDASDRMRAWIGREKEDNFLEECLAAFLRVPAAVPLVDVAESLFFRSRPRHIAPLYPRAP-GAADNSLSLTEGDDS 1400          
BLAST of mRNA_L-elsbetiae_contig1807.5188.1 vs. uniprot
Match: B8CCC2_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCC2_THAPS)

HSP 1 Score: 63.2 bits (152), Expect = 1.410e-7
Identity = 65/216 (30.09%), Postives = 104/216 (48.15%), Query Frame = 0
Query:   25 GATLIVAPTKEAARRWSDRLESVTAADGGGLSVLGYVMPLRERRRLSA--KQTASFDVVVTTYDVLKAKEVPRGVEAKEATSPRSWALPGSTQ-----WRTTRNAKGEGGAAGHGKPAASKTDHMVSLLHGVWWDRVVADGAQLLGTQR------SARAVAALALVGTARWCVVERESMAA------VESASEKMRCLAAFLRVPAEVAMVQAAEK 221
            G TLIV   K  + +W   L   T+     LSV+ +       R+L+    + A FDVV+TTYD LK+KEV   V+A      RS A  G        W T+R +  + G +      A +  H +S+LH + W RVV     +LG +       +AR+ AA+A+  ++R+ + E+E  AA          S ++R +   L++P+   + + A+K
Sbjct:  713 GGTLIVLRDKADSAQWEVALREYTS-----LSVMNHAAMQSTLRKLATTGSKCAGFDVVLTTYDALKSKEVTVPVDADGRAILRSKAEGGDGDADDGGWLTSRGSGTQTGVS------APQKCHQLSVLHRMAWYRVVL--MDVLGRKGYLTKPGTARSQAAIAVNSSSRFVLFEKEDDAAGKLVDKFRDDSRQLRSIVTALQLPSTYKLDKFAKK 915          
BLAST of mRNA_L-elsbetiae_contig1807.5188.1 vs. uniprot
Match: A0A067CBP1_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CBP1_SAPPC)

HSP 1 Score: 62.8 bits (151), Expect = 1.840e-7
Identity = 57/184 (30.98%), Postives = 82/184 (44.57%), Query Frame = 0
Query:   27 TLIVAPTKEAARRWSDRLESVTAADGGGLSVLGYVMPLRERRRLSAKQTASFDVVVTTYDVLKAKEVPRGVEAKEATSPRSWALPGSTQWRTTRNAKGEGGAAGHGKPAASKTDHMVSLLHGVWWDRVVADGAQLLGTQRSARAVAALALVGTARWCVVERESMAAVESASEKMRCLAAFLRVP 210
            TLI+AP      +W   ++  T+     LSV  Y    R+R R      A FD+V++TYDVL+  EV   V     T+PR       T W  T+  + E                ++S LH V WDRV+ D A L+    +AR  A+  L   ARWCV        +++  E +  L  F+ +P
Sbjct:  416 TLIIAPLS-LLHQWEREIKHKTS-----LSVGVYHGTDRKRFRRDPDFHA-FDIVLSTYDVLRLPEVAIPVSMVYRTAPRK-----DTSWIATKRLREE--------------KVLLSKLHRVHWDRVILDEAHLIANMTAARTQASFQLHARARWCVTGTP----IQNRCEDLHPLFKFIGIP 569          
BLAST of mRNA_L-elsbetiae_contig1807.5188.1 vs. uniprot
Match: A0A1V9ZDT9_9STRA (SNF2 family DNA/RNA helicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZDT9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.990e-7
Identity = 59/189 (31.22%), Postives = 88/189 (46.56%), Query Frame = 0
Query:   23 PRGA-TLIVAPTKEAARRWSDRLESVTAADGGGLSVLGYVMPLRERRRLSAKQTASFDVVVTTYDVLKAKEVPRGVEAKEATSPRSWALPGSTQWRTTRNAKGEGGAAGHGKPAASKTDHMVSLLHGVWWDRVVADGAQLLGTQRSARAVAALALVGTARWCVVERESMAAVESASEKMRCLAAFLRVP 210
            PRG  TLI+AP    A+ W   +++ T+     LSV  Y    R+R R       +FDV+++TYDVL+ KE    V    A++ RS      T W   +  + E                ++S LH + W+RV+ D A L+    SAR  A+  L+  ARWCV        +++  E +  L  FL +P
Sbjct:  429 PRGRPTLIIAPLSVLAQ-WEFEVKAKTS-----LSVGVYHGTGRKRFR-HQPDFCAFDVILSTYDVLRMKETAVPV----ASAGRSR----DTSWIAAKRQREE--------------KQLLSRLHKIHWERVILDEAHLIANMASARTQASFQLLANARWCVTGTP----IQNRLEDLHPLFKFLGIP 584          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1807.5188.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LB47_ECTSI3.140e-10478.19SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KIY1_9PHAE6.000e-9971.98SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
B8CCC2_THAPS1.410e-730.09Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A067CBP1_SAPPC1.840e-730.98Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9ZDT9_9STRA5.990e-731.22SNF2 family DNA/RNA helicase n=1 Tax=Achlya hypogy... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000330SNF2-related, N-terminal domainPFAMPF00176SNF2_Ncoord: 24..184
e-value: 1.7E-14
score: 53.3
NoneNo IPR availablePANTHERPTHR45626FAMILY NOT NAMEDcoord: 21..210
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 24..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1807contigL-elsbetiae_contig1807:4537..8140 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1807.5188.1mRNA_L-elsbetiae_contig1807.5188.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1807 4537..8142 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1807.5188.1 ID=prot_L-elsbetiae_contig1807.5188.1|Name=mRNA_L-elsbetiae_contig1807.5188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=271bp
GGAAGEKSDSKSARPAHPGTGLPRGATLIVAPTKEAARRWSDRLESVTAA
DGGGLSVLGYVMPLRERRRLSAKQTASFDVVVTTYDVLKAKEVPRGVEAK
EATSPRSWALPGSTQWRTTRNAKGEGGAAGHGKPAASKTDHMVSLLHGVW
WDRVVADGAQLLGTQRSARAVAALALVGTARWCVVERESMAAVESASEKM
RCLAAFLRVPAEVAMVQAAEKLFYRSRPGHIAPLHPRRPAGAADNSLSLL
SKGDAGQSSSPGSPRCKRRPP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000330SNF2_N
IPR027417P-loop_NTPase