prot_L-elsbetiae_contig1795.5136.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1795.5136.1
Unique Nameprot_L-elsbetiae_contig1795.5136.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length629
Homology
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BLAST of mRNA_L-elsbetiae_contig1795.5136.1 vs. uniprot
Match: D7FK60_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK60_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 2.240e-40
Identity = 299/548 (54.56%), Postives = 324/548 (59.12%), Query Frame = 0 
Query:   67 RPAEDGKRYVREVSRLGAEGNWRGVLSLLSMAEGDGTVVNRIMYNATIAALSKSMRWQEAIAVLDRMGAKDVISFSSAM----DACRAA--GKPAEAYQLLSRMVTRREG--VKPNTWCFNTVLSAFAKQGQYRRALSLVEVDMPRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASRGGEWELAFGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMREAGTGTPPNAWHFNICVDAHVKSGEWEKGLDLLRNDMPAAXXXXXXXXXXXXXXXXXXXXXXXVALALWDEM-ASLPLG--RNEVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTSVMAAFQGREV----------GARELDVVLDLVEEMKERGVPPTNHSHSVAIALCAAAGRHELAMRLFXXXXXXXXXXXXXXXXXXXGSCARSSGVGGXXXXXXGHWKTAXXXXXXXXXXXXXXXXXXXXXXXXACCDG 593
            RPAEDGKR+VR   RLG +G W  VLSLL  AEGDG VVN IMYNA I ALSKS                             +ACRAA  G+P EAY +LSRM  R  G  VKPN  CFNTVL+AFAK G+ R+ALSLVE DM  A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     GEWELAFGL     XXXXXXXXXXXXXXXXXXXXXXXXXXX      M+E G+  P                      + LLR DMPAA   X   XXXXXXXXXXXXXXXX   ALWDE  A+LP     +   XXXXXXXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXXXXXXXXXXXXX            +TS +AAF+G +           G REL + L L+EEMK RG+PPT+ SHS AI LC  A +HE A+ LF                    SCAR SG G       G W+TA                        ACC+G
Sbjct:   90 RPAEDGKRFVRVAQRLGGQGKWERVLSLLRQAEGDGAVVNHIMYNAAIGALSKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEACRAARGGRPDEAYGILSRMTARTGGKSVKPNMRCFNTVLAAFAKSGRSRQALSLVEEDMVNAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEWELAFGLLEDMGXXXXXXXXXXXXXXXXXXXXXXXXXXXPALLRAMKEGGSTAPXXXXXXXXXXXXXXXXXXXXXXVSLLRKDMPAAGVAXDVTXXXXXXXXXXXXXXXXXXXALWDEARAALPPSALNSHAXXXXXXXXXXXXXXXXXXXXXXXXXXAAGLPPNLRSXXXXXXXXXXXXXXXXXXXXXXXMEEAGLEPDVVSFTSAIAAFRGGKAAXXXXXXXXXGERELSLALGLLEEMKSRGLPPTSFSHSAAIKLCTDANQHERALELFEELRASGQAADEPAFTAIIDSCARHSGSGSGGGE--GRWETAVALLDEMEASGVAPSVATFNGAIRACCNG 635
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1795.5136.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK60_ECTSI2.240e-4054.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 478..627
e-value: 8.5E-34
score: 119.3
coord: 315..477
e-value: 2.4E-35
score: 124.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 201..314
e-value: 5.7E-25
score: 90.5
coord: 72..200
e-value: 3.6E-22
score: 81.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 357..381
e-value: 2.1E-4
score: 19.2
coord: 428..460
e-value: 4.8E-4
score: 18.1
coord: 213..247
e-value: 6.2E-5
score: 20.9
coord: 391..424
e-value: 5.0E-4
score: 18.1
coord: 322..355
e-value: 7.8E-5
score: 20.6
coord: 177..210
e-value: 3.5E-4
score: 18.5
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 357..382
e-value: 0.0022
score: 18.1
coord: 321..343
e-value: 0.41
score: 11.0
coord: 391..413
e-value: 0.018
score: 15.3
coord: 108..136
e-value: 0.013
score: 15.7
coord: 139..167
e-value: 0.094
score: 13.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 423..470
e-value: 4.3E-7
score: 30.0
coord: 173..221
e-value: 6.6E-9
score: 35.8
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 233..294
e-value: 3.1E-9
score: 36.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 106..140
score: 9.01
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 498..532
score: 9.219
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 354..388
score: 8.484
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 281..315
score: 7.136
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 579..613
score: 9.909
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 544..578
score: 5.536
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 389..423
score: 9.832
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 174..209
score: 10.26
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 246..280
score: 8.846
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 318..353
score: 9.58
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 459..497
score: 9.734
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 424..458
score: 10.578
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 210..245
score: 10.918
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 483..623
e-value: 4.8E-7
score: 29.4
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 559..625
coord: 284..469
coord: 136..342
coord: 85..198
coord: 479..542

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1795contigL-elsbetiae_contig1795:16310..18424 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1795.5136.1mRNA_L-elsbetiae_contig1795.5136.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1795 15515..18486 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1795.5136.1 ID=prot_L-elsbetiae_contig1795.5136.1|Name=mRNA_L-elsbetiae_contig1795.5136.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=629bp
MATQASRRVFHSRLWQRGVGAQLLLQQPTTPRRPQRPPPPVLRSNNSTST
LPKVGDLAEPKSGRKFRPAEDGKRYVREVSRLGAEGNWRGVLSLLSMAEG
DGTVVNRIMYNATIAALSKSMRWQEAIAVLDRMGAKDVISFSSAMDACRA
AGKPAEAYQLLSRMVTRREGVKPNTWCFNTVLSAFAKQGQYRRALSLVEV
DMPRAGVMPNLRTWSTLLDACREAGETGQQAVSLLSRMKNAGLKPDIWCF
NHCLNAASRGGEWELAFGLLEDMGKAEVRPNSWSYSAAMKACVNAKEYQM
VPALLDGMREAGTGTPPNAWHFNICVDAHVKSGEWEKGLDLLRNDMPAAG
VPPDITSYSSCMDAAGKAGEWEVALALWDEMASLPLGRNEVAYNVAIDVC
GKAGLVDRALALLAGSRTAGFPPNLIALNSAIDACARAGQPQNALAVFRD
IGRTGLRPDAVSYTSVMAAFQGREVGARELDVVLDLVEEMKERGVPPTNH
SHSVAIALCAAAGRHELAMRLFEELKRAGQAPNEAVFNAAIGSCARSSGV
GGGGGGGGGHWKTALRLLDEMEASGVAPNLTAFNRAIRACCDGGRWALGY
SLLDRMGLEGVDPDVSSMNALIRGLRPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long