prot_L-elsbetiae_contig1781.5073.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig1781.5073.1
Unique Name	prot_L-elsbetiae_contig1781.5073.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	273

Homology

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BLAST of mRNA_L-elsbetiae_contig1781.5073.1 vs. uniprot
Match: A0A6H5JEX9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX9_9PHAE)

HSP 1 Score: 368 bits (944), Expect = 9.320e-127
Identity = 185/194 (95.36%), Postives = 189/194 (97.42%), Query Frame = 0

Query:    1 MSAFAEAPVMEAVAAVVAPPVPAAAAPVSSTVFVGNLSWGTTSEDLRNFMGSLGEVVSADVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTSDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAITEMQNYQIDSRPIQVREDREIG 194
            MSAFAEAP ME VA+VVAPPV A AAPVSSTVFVGNLSWGTTSEDLR FMGSLGEVVSA+VQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWST+DEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAI+EMQNYQIDSRPIQVREDREIG
Sbjct:    1 MSAFAEAPGMEGVASVVAPPVAAGAAPVSSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIG 194

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BLAST of mRNA_L-elsbetiae_contig1781.5073.1 vs. uniprot
Match: D8LK87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK87_ECTSI)

HSP 1 Score: 347 bits (891), Expect = 1.530e-116
Identity = 224/258 (86.82%), Postives = 228/258 (88.37%), Query Frame = 0

Query:   28 VSSTVFVGNLSWGTTSEDLRNFMGSLGEVVSADVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTSDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAITEMQNYQIDSRPIQVREDREIGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDA------------CTVFVGNLAWGTTDDDLLATFQ 273
            VSSTVFVGNLSWGTTSEDLR FMGSLGEVVSA+VQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWST+DEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAI+EMQNYQIDSRPIQVREDREIG GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            G+                FVGNLAWGTTDDDLLATFQ
Sbjct:   50 VSSTVFVGNLSWGTTSEDLRTFMGSLGEVVSAEVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTTDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAISEMQNYQIDSRPIQVREDREIG-GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPCPGFGGKPRGGEKEEKLFXXXXXXXXXXFVGNLAWGTTDDDLLATFQ 306

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BLAST of mRNA_L-elsbetiae_contig1781.5073.1 vs. uniprot
Match: A0A835ZG94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG94_9STRA)

HSP 1 Score: 260 bits (664), Expect = 4.420e-83
Identity = 145/242 (59.92%), Postives = 171/242 (70.66%), Query Frame = 0

Query:   31 TVFVGNLSWGTTSEDLRNFMGSLGEVVSADVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTSDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAITEMQNYQIDSRPIQVREDREIGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDACTVFVGNLAWGTTDDDLLATF 272
            TVFVGNL+W TT+++LR+FM S+G V+S+ VQ HADSGRSKGWGLV Y+    A AAIEQLNNA+LGGR +H+RLDR  ++ SGGF VFVGNLPWST+ EDLQ +FA ++PYD HVKTNMAGRSRGF ILRF+ PE GQ+AI  M  + ID RPIQVREDR++G G                      XXXXXXXXXXXXXX                 D CTVFVGNLAWGTT++DL+A F
Sbjct:    8 TVFVGNLAWNTTADELRDFMASVGTVLSSAVQCHADSGRSKGWGLVEYSTDGEAMAAIEQLNNAELGGRAVHVRLDRSNIDTSGGFAVFVGNLPWSTTTEDLQTLFAQFQPYDVHVKTNMAGRSRGFAILRFSAPEPGQQAIAAMNGFDIDGRPIQVREDRDVGGGAEMGRGTRRAAGRGAAEPRADAXXXXXXXXXXXXXXPHKQEAV----------DRCTVFVGNLAWGTTNEDLVAHF 239

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BLAST of mRNA_L-elsbetiae_contig1781.5073.1 vs. uniprot
Match: A0A835YWJ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ3_9STRA)

HSP 1 Score: 241 bits (615), Expect = 1.170e-75
Identity = 145/243 (59.67%), Postives = 164/243 (67.49%), Query Frame = 0

Query:   31 TVFVGNLSWGTTSEDLRNFMGSLGEVVSADVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTSDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAITEMQNYQIDSRPIQVREDREIGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDACTVFVGNLAWGTTDDDLLATFQ 273
            TVFVGNLSW TTSE+LR+FM S GE+VS++VQ HADSGRSKGWGLV Y+ P  A AAIE LNNADLGGR +H+R DR  +E SGGF VFVGNLPWS +D DL  +FA + P+D HVKTNM GRSRGFGILRF +PE G+ AI  M  ++I+ R IQVREDRE GE           XXXXXXXXXXXXXXXXX                            CTVFVGNLAW TT +DL   F 
Sbjct:    8 TVFVGNLSWNTTSEELRDFMASQGEIVSSEVQCHADSGRSKGWGLVQYSTPEEATAAIELLNNADLGGRSVHLRFDRTTIETSGGFAVFVGNLPWSVTDLDLTALFAKFNPFDAHVKTNMTGRSRGFGILRFHSPEEGREAIEAMNGFEIEGRHIQVREDRE-GE--------VRGXXXXXXXXXXXXXXXXXGAPAEGAATEAAHTSPAPAAAARKEPSGCTVFVGNLAWTTTTEDLTEHFS 241

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BLAST of mRNA_L-elsbetiae_contig1781.5073.1 vs. uniprot
Match: A0A7S2V6P6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6P6_9STRA)

HSP 1 Score: 212 bits (539), Expect = 3.270e-64
Identity = 131/242 (54.13%), Postives = 155/242 (64.05%), Query Frame = 0

Query:   31 TVFVGNLSWGTTSEDLRNFMGSLGEVVSADVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTSDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAITEMQNYQIDSRPIQVREDREIGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDACTVFVGNLAWGTTDDDLLATF 272
            TVFVGNL W TT+E+L+ FM   G VVSADVQ+HADSGRSKGWGLV Y+    A+ AI+ LN+  L  R IH+RLDR  ++ + G  VFVGNLPWST+ E L ++F  YEP+D HVKTNMAGRSRGF ILRF   +    AIT+M  Y ++ R IQVREDR + EG      XXXXXXXXXXXX       XXXXXXX                        T+FVGNLAW TTD +L+  F
Sbjct:    7 TVFVGNLKWSTTNEELQEFMSQCGNVVSADVQAHADSGRSKGWGLVEYSTAEEAQNAIQLLNSTTLQERQIHVRLDRSNLDETAGVSVFVGNLPWSTTSETLAELFGSYEPFDVHVKTNMAGRSRGFAILRFNNQDQANAAITDMNGYNLEERNIQVREDRGVAEGGPRGGSXXXXXXXXXXXXRGGAEDSXXXXXXXQGGARTPRNVEPSN----------TLFVGNLAWSTTDTELMEHF 238

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BLAST of mRNA_L-elsbetiae_contig1781.5073.1 vs. uniprot
Match: A0A6U4FSY9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FSY9_9STRA)

HSP 1 Score: 193 bits (491), Expect = 1.560e-57
Identity = 84/163 (51.53%), Postives = 116/163 (71.17%), Query Frame = 0

Query:   29 SSTVFVGNLSWGTTSEDLRNFMGSLGEVVSADVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTSDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAITEMQNYQIDSRPIQVREDR 191
            ++ +++GNL+W TT E+L  F+GS+GEV++A VQ HADS RSKGWGL TYA P  A  A+ QL+ ++L GRP+H+R DR ++E  GG  +FVGN+PW  + E L + F P++P D HVKTNMAGRSRGF I +F   EL   A+ +M   ++  R +QVRED+
Sbjct:    3 NTDIYIGNLTWDTTDEELLEFLGSVGEVLNASVQRHADSQRSKGWGLATYAAPEGAALAVSQLDQSELKGRPVHVRFDRSKIENVGGVNIFVGNIPWEITSEQLYESFFPFQPIDVHVKTNMAGRSRGFAIAKFPNQELADAAVAQMNGKELQGRQLQVREDK 165

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BLAST of mRNA_L-elsbetiae_contig1781.5073.1 vs. uniprot
Match: A0A7S2DGC6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DGC6_9STRA)

HSP 1 Score: 193 bits (491), Expect = 9.200e-57
Identity = 88/164 (53.66%), Postives = 114/164 (69.51%), Query Frame = 0

Query:   31 TVFVGNLSWGTTSEDLRNFMGSLGEVVSADVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTSDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAITEMQNYQIDSRPIQVREDREIG 194
            T+FVGNLSW TT+E+L  FM + G V S  VQ+HAD+GRSKGW LVTY         I+Q N  +  GR +++R DR ++E   GFPVFVGNLPWST+ EDL  +F  + P+D HVKT MAGRSRGF ILRF + E+ Q+A   M  ++++ R I+VREDR+ G
Sbjct:   35 TLFVGNLSWATTNEELSEFMANYGTVASCQVQAHADTGRSKGWALVTYTTAEECTYTIQQTNGQEFNGRNLNVRQDRSQMEELSGFPVFVGNLPWSTTSEDLSDLFRDFGPFDVHVKTTMAGRSRGFAILRFESLEVAQQATAAMNGHELEGRSIEVREDRQTG 198

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BLAST of mRNA_L-elsbetiae_contig1781.5073.1 vs. uniprot
Match: A0A7S2GAK8_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GAK8_9STRA)

HSP 1 Score: 189 bits (479), Expect = 3.030e-55
Identity = 88/167 (52.69%), Postives = 118/167 (70.66%), Query Frame = 0

Query:   27 PVSSTVFVGNLSWGTTSEDLRNFMGSLGEVVSADVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTSDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAITEMQNYQIDSRPIQVREDREI 193
            P ++T+FVGNL+W TTSEDL+ +  ++G V+S +VQSHAD+GRSKGW LVTY+    A  AI QL+  D   RP+++R+DR  VE  GG  VFVGNLPWST++E L ++F  + P+D +VKT M GRSRGF I+RF TPE  + AI  MQ +  + R + VR DR +
Sbjct:   20 PSTATLFVGNLAWSTTSEDLKKYCAAVGNVLSVEVQSHADTGRSKGWALVTYSTSEEAAVAITQLHGHDFNDRPLNVRVDRSNVEQMGGTLVFVGNLPWSTTNEQLLELFGQFNPFDVNVKTTMNGRSRGFAIVRFDTPERAEVAIGTMQGFIFEGRTLDVRIDRPL 186

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BLAST of mRNA_L-elsbetiae_contig1781.5073.1 vs. uniprot
Match: K8YWK2_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YWK2_NANGC)

HSP 1 Score: 181 bits (458), Expect = 6.390e-53
Identity = 84/164 (51.22%), Postives = 112/164 (68.29%), Query Frame = 0

Query:   28 VSSTVFVGNLSWGTTSEDLRNFMGSLGEVVSADVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTSDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAITEMQNYQIDSRPIQVREDR 191
            +S TVFVGNLSWGTT++ L   M + G V+  +VQ+H+D+GRSKGW LVT+     A  A+E L   ++ GRP+++R DR E+E   GF VFVGNLPW  +   L+ +F+ + PYD H+KTNM+GRSRGFG+LRF + E  QRAI +M    +  R I VR DR
Sbjct:    1 MSKTVFVGNLSWGTTADSLTAIMETAGRVLGVEVQAHSDTGRSKGWALVTFETAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFSPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDR 164

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BLAST of mRNA_L-elsbetiae_contig1781.5073.1 vs. uniprot
Match: A0A4D9CR95_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CR95_9STRA)

HSP 1 Score: 152 bits (383), Expect = 2.390e-40
Identity = 70/142 (49.30%), Postives = 95/142 (66.90%), Query Frame = 0

Query:   50 MGSLGEVVSADVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRPIHIRLDRKEVEASGGFPVFVGNLPWSTSDEDLQQIFAPYEPYDCHVKTNMAGRSRGFGILRFATPELGQRAITEMQNYQIDSRPIQVREDR 191
            M + G V+  +VQ+H+D+GRSKGW LVT+     A  A+E L   ++ GRP+++R DR E+E   GF VFVGNLPW  +   L+ +F+ + PYD H+KTNM+GRSRGFG+LRF + E  QRAI +M    +  R I VR DR
Sbjct:    1 METAGRVLDVEVQAHSDTGRSKGWALVTFEAAEDASRAMELLCGREVEGRPLYVREDRTEIEKEEGFVVFVGNLPWDMTASGLRTVFSEFRPYDVHIKTNMSGRSRGFGLLRFRSSEEAQRAIEQMHGITVQERKILVRLDR 142

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig1781.5073.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig1781.5073.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JEX9_9PHAE	9.320e-127	95.36	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
D8LK87_ECTSI	1.530e-116	86.82	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A835ZG94_9STRA	4.420e-83	59.92	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YWJ3_9STRA	1.170e-75	59.67	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S2V6P6_9STRA	3.270e-64	54.13	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A6U4FSY9_9STRA	1.560e-57	51.53	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
A0A7S2DGC6_9STRA	9.200e-57	53.66	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S2GAK8_9STRA	3.030e-55	52.69	Hypothetical protein n=2 Tax=Florenciella parvula ...	[more]
K8YWK2_NANGC	6.390e-53	51.22	Uncharacterized protein n=1 Tax=Nannochloropsis ga...	[more]
A0A4D9CR95_9STRA	2.390e-40	49.30	Uncharacterized protein n=2 Tax=Monodopsidaceae Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 31..104 e-value: 2.3E-23 score: 93.6 coord: 117..188 e-value: 1.7E-19 score: 80.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 32..102 e-value: 1.8E-17 score: 62.9 coord: 118..185 e-value: 3.2E-15 score: 55.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 30..108 score: 16.995
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 116..192 score: 14.402
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 15..113 e-value: 2.6E-24 score: 88.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 114..211 e-value: 6.8E-20 score: 73.3
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 116..272 coord: 25..192
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 200..273
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 115..224
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 15..110

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig1781	contig	L-elsbetiae_contig1781:16382..23218 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig1781.5073.1	mRNA_L-elsbetiae_contig1781.5073.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig1781 16382..23218 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig1781.5073.1 ID=prot_L-elsbetiae_contig1781.5073.1|Name=mRNA_L-elsbetiae_contig1781.5073.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=273bp
MSAFAEAPVMEAVAAVVAPPVPAAAAPVSSTVFVGNLSWGTTSEDLRNFM
GSLGEVVSADVQSHADSGRSKGWGLVTYADPAIAEAAIEQLNNADLGGRP
IHIRLDRKEVEASGGFPVFVGNLPWSTSDEDLQQIFAPYEPYDCHVKTNM
AGRSRGFGILRFATPELGQRAITEMQNYQIDSRPIQVREDREIGEGGGGG
GGGGGGGGRRGRGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGDGGGD
ACTVFVGNLAWGTTDDDLLATFQ

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf