prot_L-elsbetiae_contig1779.5058.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig1779.5058.1
Unique Name	prot_L-elsbetiae_contig1779.5058.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	398

Homology

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BLAST of mRNA_L-elsbetiae_contig1779.5058.1 vs. uniprot
Match: D7G5I7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I7_ECTSI)

HSP 1 Score: 419 bits (1077), Expect = 3.490e-141
Identity = 201/206 (97.57%), Postives = 204/206 (99.03%), Query Frame = 0

Query:   46 DRNPRDRNGMSGSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEXXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLDKVLRK 251
            DRNPRDRNGMSGSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNP+SAVMAAGGDPSQLPKDHVQDDFE XXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFLDEEDADSALKGLMGRWYA RPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYL+K+LRK
Sbjct:   44 DRNPRDRNGMSGSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPVSAVMAAGGDPSQLPKDHVQDDFEDXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFLDEEDADSALKGLMGRWYASRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLEKLLRK 249

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BLAST of mRNA_L-elsbetiae_contig1779.5058.1 vs. uniprot
Match: A0A6H5L153_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L153_9PHAE)

HSP 1 Score: 334 bits (857), Expect = 3.250e-112
Identity = 163/168 (97.02%), Postives = 164/168 (97.62%), Query Frame = 0

Query:   52 RNGMSGSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEXXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFD 219
            RNGMSGSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNP+SAVMAAGGDPSQLPKDHVQDDF XXXXX   ELSKFGEISEMNVCDNLGDHLIGNVYVKFLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFD
Sbjct:    5 RNGMSGSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPVSAVMAAGGDPSQLPKDHVQDDFXXXXXXXXXELSKFGEISEMNVCDNLGDHLIGNVYVKFLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFD 172

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BLAST of mRNA_L-elsbetiae_contig1779.5058.1 vs. uniprot
Match: A0A835YWK2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWK2_9STRA)

HSP 1 Score: 324 bits (831), Expect = 1.040e-107
Identity = 145/198 (73.23%), Postives = 169/198 (85.35%), Query Frame = 0

Query:   54 GMSGSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEXXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLDKVLRK 251
            G +G  RGGAEHLARIHGTEEDKVNCPF+YKIGACRHGDRCSRQHHKPPFSQT+L+ ++YQNP SA++AAGGDP+ + +D   D+FE     VY+EL KFG + EM+VCDNLGDHL+GNVY+KF DEEDAD+ALKGL GRWY GRP++ EFSPV DFREARCRQ+DEGTC RGGQCNFMHV+ V + V+ YLDKV RK
Sbjct:   13 GGAGGPRGGAEHLARIHGTEEDKVNCPFYYKIGACRHGDRCSRQHHKPPFSQTLLLSHMYQNPASALLAAGGDPNAIDQDAANDEFEDFYEEVYEELCKFGSVEEMHVCDNLGDHLVGNVYIKFSDEEDADAALKGLFGRWYGGRPMVPEFSPVNDFREARCRQYDEGTCGRGGQCNFMHVRHVSKDVVRYLDKVARK 210

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BLAST of mRNA_L-elsbetiae_contig1779.5058.1 vs. uniprot
Match: A0A7S3XMX4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMX4_HETAK)

HSP 1 Score: 316 bits (810), Expect = 3.380e-104
Identity = 140/181 (77.35%), Postives = 159/181 (87.85%), Query Frame = 0

Query:   59 ARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEXXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPR 239
            ARGGAEHLARIHGTEEDKVNCPF++KIGACRHGDRCSRQHHKPPFSQT+LVQ++YQNP SA+ AAGGDP+ +     Q+DFE     V++ELSKFG + E+N+CDNLGDHL+GNVY K+ DEEDADSALK L GR+YAGRP++CEFSPVTDFREARCRQFDEGTC RGG CNFMHVK VPR
Sbjct:   20 ARGGAEHLARIHGTEEDKVNCPFYFKIGACRHGDRCSRQHHKPPFSQTVLVQHMYQNPASAIAAAGGDPNSIDHRQAQEDFEEFYEEVFEELSKFGAVEELNICDNLGDHLVGNVYAKYADEEDADSALKALYGRFYAGRPLICEFSPVTDFREARCRQFDEGTCARGGYCNFMHVKAVPR 200

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BLAST of mRNA_L-elsbetiae_contig1779.5058.1 vs. uniprot
Match: A0A835ZC00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC00_9STRA)

HSP 1 Score: 314 bits (805), Expect = 3.810e-102
Identity = 141/190 (74.21%), Postives = 163/190 (85.79%), Query Frame = 0

Query:   62 GAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEXXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLDKVLRK 251
            GAEHLARIHGTEEDKVNCPF+YKIGACRHGDRCSRQHHKPPFSQTIL+ +++QNP SA++AAGG+P  + ++   D+FE     VY+EL KFG + EMNVCDNLGDHL+GNVYVKF DEEDAD+ALKGL GRWYAGRP++ EFSPVTDFREARCRQ+DEGTC RGGQCNFMHV+ V R V  Y DK+ R+
Sbjct:   62 GAEHLARIHGTEEDKVNCPFYYKIGACRHGDRCSRQHHKPPFSQTILLSHMFQNPASALIAAGGNPETIDQEATNDEFEDFYEEVYEELCKFGTVEEMNVCDNLGDHLVGNVYVKFSDEEDADNALKGLFGRWYAGRPMVPEFSPVTDFREARCRQYDEGTCGRGGQCNFMHVRHVSRDVARYCDKMARR 251

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BLAST of mRNA_L-elsbetiae_contig1779.5058.1 vs. uniprot
Match: A0A7S3ZUE9_9STRA (Hypothetical protein n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZUE9_9STRA)

HSP 1 Score: 302 bits (773), Expect = 1.720e-96
Identity = 139/206 (67.48%), Postives = 166/206 (80.58%), Query Frame = 0

Query:   47 RNPRDRNGMSGSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEXXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLDKVLRKK 252
            RN RDR    G ARGGA HLARIHGTEEDKVNCPF++KIGACRHGDRCSRQHHKPPFSQT++VQ++YQNP S + AAGGDPSQL    VQ++F+     VY EL+ +GEI E+NVC+NLGDH++GNVY KF DEE +D+ALK L GR+YAGRP++CEFSPVTDFREARCRQ+DE  C RGG CNFMH++   R +   L+K  +KK
Sbjct:  116 RNWRDRE--LGGARGGATHLARIHGTEEDKVNCPFYFKIGACRHGDRCSRQHHKPPFSQTMIVQHMYQNPASQIAAAGGDPSQLDPKKVQEEFDDFYEEVYDELAGYGEIEELNVCENLGDHMVGNVYCKFADEEHSDAALKALFGRFYAGRPLVCEFSPVTDFREARCRQYDEAVCTRGGYCNFMHIRTPSRSLRKDLEKRYKKK 319

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BLAST of mRNA_L-elsbetiae_contig1779.5058.1 vs. uniprot
Match: F0Y2V2_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2V2_AURAN)

HSP 1 Score: 291 bits (744), Expect = 6.540e-95
Identity = 127/185 (68.65%), Postives = 153/185 (82.70%), Query Frame = 0

Query:   63 AEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEXXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLDK 247
            A HLARIHGTEEDKVNCPF++KIGACRHGDRCSRQHHKPPFSQT++VQ++YQNP S + AAGGDPSQL    VQ++F+     VY EL+K+GEI E+NVC+NLGDH++GNVY KF DEE  D++LK L GR+YAGRP++CEFSPVTDFREARCRQ+DE  C RGG CNFMH++   R +   L+K
Sbjct:    1 ATHLARIHGTEEDKVNCPFYFKIGACRHGDRCSRQHHKPPFSQTMIVQHMYQNPASQIAAAGGDPSQLDPKKVQEEFDDFYEEVYDELAKYGEIEELNVCENLGDHMVGNVYAKFADEEHTDASLKALFGRFYAGRPLVCEFSPVTDFREARCRQYDEAVCTRGGYCNFMHIRTPSRSLRRDLEK 185

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BLAST of mRNA_L-elsbetiae_contig1779.5058.1 vs. uniprot
Match: H3G5Y3_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3G5Y3_PHYRM)

HSP 1 Score: 291 bits (745), Expect = 8.280e-95
Identity = 128/186 (68.82%), Postives = 156/186 (83.87%), Query Frame = 0

Query:   63 AEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEXXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLDKV 248
            AEHLARIHGTEED+VNCPF++KIGACRHGDRCSR H+KP FSQTILV ++YQNPI+ V+A  GDP+ L + HV ++FE     +++EL KFG++ E+N+CDNLGDHL+GNVY KF DEE A +A K L GR+YAGRP++CEFSPVTDFREARCRQFDEGTCNRGG CNFMH+K VPR +   L+K+
Sbjct:    1 AEHLARIHGTEEDRVNCPFYFKIGACRHGDRCSRLHNKPVFSQTILVSHMYQNPIAQVIAQNGDPASLDQRHVDEEFEDFYEEIFEELCKFGKLEELNICDNLGDHLVGNVYAKFDDEEHAAAAQKALYGRFYAGRPLVCEFSPVTDFREARCRQFDEGTCNRGGYCNFMHIKTVPRAMQRELEKM 186

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BLAST of mRNA_L-elsbetiae_contig1779.5058.1 vs. uniprot
Match: T0S0M7_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0S0M7_SAPDV)

HSP 1 Score: 294 bits (752), Expect = 1.170e-94
Identity = 132/187 (70.59%), Postives = 157/187 (83.96%), Query Frame = 0

Query:   61 GGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEXXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLDK 247
            GGAEHLARIHGTEED+VNCPF++KIGACRHGDRCSR H+KP FSQTILV+++YQNP+S ++AA GDPSQL +  V +DFE     VY+EL KFG++ E+NVCDNLGDHL+GNVY KF DEE A +A K L GR+Y GRP++CEFSPVTDFREARCRQFDEGTCNRGG CNFMH+K V   +M  L++
Sbjct:   51 GGAEHLARIHGTEEDRVNCPFYFKIGACRHGDRCSRLHNKPVFSQTILVKHMYQNPLSVIIAANGDPSQLDQKTVDEDFEDFFEEVYEELCKFGKVDELNVCDNLGDHLVGNVYAKFDDEECAAAAQKALYGRFYGGRPLICEFSPVTDFREARCRQFDEGTCNRGGYCNFMHIKMVSHAMMIELER 237

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BLAST of mRNA_L-elsbetiae_contig1779.5058.1 vs. uniprot
Match: A0A024TD10_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TD10_9STRA)

HSP 1 Score: 292 bits (748), Expect = 2.100e-94
Identity = 135/198 (68.18%), Postives = 162/198 (81.82%), Query Frame = 0

Query:   50 RDRNGMSGSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEXXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLDK 247
            RDR G +    GGAEHLARIHGTEED+VNCPF++KIGACRHGDRCSR H+KP FSQT+LV+++YQNP+S V+AA GDP+QL +  V +DFE     V++EL KFG++ E+NVCDNLGDHL+GNVY KF DEE A +A   L GR+Y GRPIMCE+SPVTDFREARCRQFDEGTCNRGG CNFMH+K V R +M  L++
Sbjct:   27 RDRRGDATG--GGAEHLARIHGTEEDRVNCPFYFKIGACRHGDRCSRSHNKPVFSQTLLVKHMYQNPLSTVIAANGDPNQLDQKTVDEDFEDFFEEVFEELCKFGKLEELNVCDNLGDHLVGNVYAKFEDEECAAAAHTALYGRFYGGRPIMCEYSPVTDFREARCRQFDEGTCNRGGYCNFMHIKMVSRAMMIELER 222

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig1779.5058.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig1779.5058.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G5I7_ECTSI	3.490e-141	97.57	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L153_9PHAE	3.250e-112	97.02	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A835YWK2_9STRA	1.040e-107	73.23	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]
A0A7S3XMX4_HETAK	3.380e-104	77.35	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A835ZC00_9STRA	3.810e-102	74.21	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S3ZUE9_9STRA	1.720e-96	67.48	Hypothetical protein n=4 Tax=Pelagomonas calceolat...	[more]
F0Y2V2_AURAN	6.540e-95	68.65	Uncharacterized protein (Fragment) n=1 Tax=Aureoco...	[more]
H3G5Y3_PHYRM	8.280e-95	68.82	Uncharacterized protein n=2 Tax=Phytophthora TaxID...	[more]
T0S0M7_SAPDV	1.170e-94	70.59	Uncharacterized protein n=2 Tax=Saprolegnia TaxID=...	[more]
A0A024TD10_9STRA	2.100e-94	68.18	Uncharacterized protein n=7 Tax=Aphanomyces TaxID=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009145	U2 auxiliary factor small subunit	PRINTS	PR01848	U2AUXFACTOR	coord: 164..186 score: 60.28 coord: 79..98 score: 77.27 coord: 98..118 score: 41.34 coord: 226..238 score: 61.19 coord: 136..151 score: 44.89 coord: 191..215 score: 62.36
IPR009145	U2 auxiliary factor small subunit	PANTHER	PTHR12620	U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT	coord: 63..303
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 74..100 e-value: 0.23 score: 20.5 coord: 209..235 e-value: 3.5E-5 score: 33.2
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 211..235 e-value: 7.9E-7 score: 28.8 coord: 76..99 e-value: 3.8E-6 score: 26.7
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 209..236 score: 14.202
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 73..101 score: 12.361
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 128..203 e-value: 1.8E-8 score: 44.2
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 106..203 e-value: 0.0087 score: 24.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 144..200 e-value: 1.3E-5 score: 24.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 105..207 score: 11.844
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 104..206 e-value: 8.1E-31 score: 108.4
None	No IPR available	PANTHER	PTHR12620:SF8	U2 SMALL NUCLEAR RNA AUXILIARY FACTOR 1	coord: 63..303
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 92..215

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig1779	contig	L-elsbetiae_contig1779:2053..12444 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig1779.5058.1	mRNA_L-elsbetiae_contig1779.5058.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig1779 2053..12444 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig1779.5058.1 ID=prot_L-elsbetiae_contig1779.5058.1|Name=mRNA_L-elsbetiae_contig1779.5058.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=398bp
MSYYGGGGGGGGGGGGGGYGGGGGYGGGGGGGGGGGMSVYGGGGNDRNPR
DRNGMSGSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHK
PPFSQTILVQNLYQNPISAVMAAGGDPSQLPKDHVQDDFEDFFEEVYQEL
SKFGEISEMNVCDNLGDHLIGNVYVKFLDEEDADSALKGLMGRWYAGRPI
MCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLDKVLR
KKKGGGNDHDDDGGDRRSKKRSRSRSRDRDSKKDKKDKDKDKDKDRSERK
RRHYTEAPAADGADKPAKTDKSSDSEDKKKNESDAAADGDTKKEENDAAG
ENEKPTTNGSEEAGEDRGAEETSGGIDLVPAADDDEEDEEEKGDAANG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009145	U2AF_small
IPR000571	Znf_CCCH
IPR003954	RRM_dom_euk
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf