prot_L-elsbetiae_contig17373.4865.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig17373.4865.1
Unique Nameprot_L-elsbetiae_contig17373.4865.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length56
Homology
BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Match: D7FM71_ECTSI (60S ribosomal protein L38 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM71_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 8.210e-31
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0
Query:    1 RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQIQ 55
            RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQ+Q
Sbjct:   18 RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQLQ 72          
BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Match: A0A836CJ21_9STRA (Ribosomal protein L38 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ21_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 4.260e-19
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 0
Query:    1 RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 54
            +DAKSVKIK  K    TKFKIRCSRYLYTLCV DK+KADKLTQSLPPGL +K I
Sbjct:   18 KDAKSVKIK--KTAEVTKFKIRCSRYLYTLCVADKDKADKLTQSLPPGLQRKDI 69          
BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Match: A0A485KGK6_9STRA (Aste57867_4412 protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KGK6_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.000e-17
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 0
Query:    1 RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 54
            +DA+SVKIK  K     KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K I
Sbjct:   18 KDARSVKIK--KTAQVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69          
BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Match: UPI00083C7834 (60S ribosomal protein L38 n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083C7834)

HSP 1 Score: 77.8 bits (190), Expect = 1.090e-17
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 0
Query:    1 RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQ 53
            +DAKSVKIKNN   ++TKFK+RCSR+LYTL + DKEKA+KL QSLPPGL  K+
Sbjct:   18 KDAKSVKIKNNPKKNNTKFKVRCSRFLYTLVINDKEKAEKLKQSLPPGLQVKE 70          
BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Match: H3BEF3_LATCH (60S ribosomal protein L38 n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3BEF3_LATCH)

HSP 1 Score: 77.8 bits (190), Expect = 1.410e-17
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 54
            +DAKSVKIK NK   + KFK+RCS+YLYTL +TDKEKA+KL QSLPPGL KK+I
Sbjct:   25 KDAKSVKIKKNK--ENVKFKVRCSKYLYTLVITDKEKAEKLKQSLPPGLRKKKI 76          
BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Match: W2IQQ0_PHYPR (60S ribosomal protein L38 n=16 Tax=Peronosporaceae TaxID=4777 RepID=W2IQQ0_PHYPR)

HSP 1 Score: 77.4 bits (189), Expect = 1.430e-17
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0
Query:    1 RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 54
            +DA+SVKIK  K+    KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K I
Sbjct:   18 KDARSVKIK--KSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69          
BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Match: A0A067CFE6_SAPPC (60S ribosomal protein L38 n=3 Tax=Oomycota TaxID=4762 RepID=A0A067CFE6_SAPPC)

HSP 1 Score: 77.4 bits (189), Expect = 1.430e-17
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 0
Query:    1 RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 54
            +DA+SVKIK  K     KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K I
Sbjct:   18 KDARSVKIK--KTPQVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69          
BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Match: A0A1E7ETU4_9STRA (Ribosomal protein L38 n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7ETU4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.430e-17
Identity = 41/53 (77.36%), Postives = 43/53 (81.13%), Query Frame = 0
Query:    2 DAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 54
            DAK VKIK  K    TKFKIRCSR+LYTLCVTD EKADKLTQSLPPGL +K I
Sbjct:   19 DAKLVKIK--KRDSQTKFKIRCSRFLYTLCVTDAEKADKLTQSLPPGLQRKSI 69          
BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Match: M4BFU5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BFU5_HYAAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.350e-17
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0
Query:    1 RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 54
            +DA+SVKIK  K+    KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K I
Sbjct:   37 KDARSVKIK--KSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 88          
BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Match: RL38_BRABE (60S ribosomal protein L38 n=5 Tax=Eumetazoa TaxID=6072 RepID=RL38_BRABE)

HSP 1 Score: 76.3 bits (186), Expect = 4.200e-17
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0
Query:    1 RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQI 54
            +DAKSVKIK NK   + KFK+RCSRYLYTL +TDKEKADKL QSLPPGL  K++
Sbjct:   18 KDAKSVKIKKNK--DNVKFKVRCSRYLYTLVITDKEKADKLKQSLPPGLAVKEL 69          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17373.4865.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM71_ECTSI8.210e-3198.1860S ribosomal protein L38 n=2 Tax=Ectocarpus TaxID... [more]
A0A836CJ21_9STRA4.260e-1977.78Ribosomal protein L38 n=1 Tax=Tribonema minus TaxI... [more]
A0A485KGK6_9STRA1.000e-1774.07Aste57867_4412 protein n=3 Tax=Saprolegniaceae Tax... [more]
UPI00083C78341.090e-1769.8160S ribosomal protein L38 n=1 Tax=Nicrophorus vesp... [more]
H3BEF3_LATCH1.410e-1772.2260S ribosomal protein L38 n=1 Tax=Latimeria chalum... [more]
W2IQQ0_PHYPR1.430e-1774.0760S ribosomal protein L38 n=16 Tax=Peronosporaceae... [more]
A0A067CFE6_SAPPC1.430e-1774.0760S ribosomal protein L38 n=3 Tax=Oomycota TaxID=4... [more]
A0A1E7ETU4_9STRA1.430e-1777.36Ribosomal protein L38 n=2 Tax=Bacillariaceae TaxID... [more]
M4BFU5_HYAAE2.350e-1774.07Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
RL38_BRABE4.200e-1772.2260S ribosomal protein L38 n=5 Tax=Eumetazoa TaxID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038464Ribosomal protein L38e superfamilyGENE3D3.30.720.90coord: 1..55
e-value: 2.6E-23
score: 83.8
IPR002675Ribosomal protein L38ePFAMPF01781Ribosomal_L38ecoord: 2..54
e-value: 1.3E-25
score: 89.3
IPR002675Ribosomal protein L38ePANTHERPTHR1096560S RIBOSOMAL PROTEIN L38coord: 1..53
NoneNo IPR availablePRODOMPD010361coord: 1..54
e-value: 5.0E-15
score: 191.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17373contigL-elsbetiae_contig17373:1693..2500 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17373.4865.1mRNA_L-elsbetiae_contig17373.4865.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig17373 748..2500 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig17373.4865.1 ID=prot_L-elsbetiae_contig17373.4865.1|Name=mRNA_L-elsbetiae_contig17373.4865.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
RDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLH
KKQIQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038464Ribosomal_L38e_sf
IPR002675Ribosomal_L38e