prot_L-elsbetiae_contig1734.4853.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig1734.4853.1
Unique Name	prot_L-elsbetiae_contig1734.4853.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	692

Homology

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BLAST of mRNA_L-elsbetiae_contig1734.4853.1 vs. uniprot
Match: D7FM48_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM48_ECTSI)

HSP 1 Score: 337 bits (864), Expect = 1.170e-103
Identity = 263/604 (43.54%), Postives = 310/604 (51.32%), Query Frame = 0

Query:  125 IGEESHPPRGGESR----RKRSRLSLSRRRASSPQQ--VVVAPAVF------------APTGDSKSGGSCAVVGCFPGGISPRLSEGGVGSAR---------RSPRKSPPPPFVGLKNVGETCYVNTVLQSLAACRTALESSRGASGAAAGDGGTVEDRQKAYEGWGSSPAAPVRTADDAEISSVHTVLTGVRSGTDGNPVFFALGKVLGEMDARNRTLFQQQWPELPVELS-TGPEISSLTGGGSPEMP----VHPSGRTPLRLDVPARQDVCAGAIAPNALVELIREGWLSAERATGGATAGLVRRLGRGGSPAVG--DFGNGQACVSELLGKLLDVGAATAAXXXXXGVVHGGGELGDASSGSVGDL--GSFDNSGVCSLAAAFRGTLCARTHCVECERERISREEFTELTLPPLVLPLQPLAQPHFSPRLAAAQGAEAVDNDTGDLSKLPPQETQTLQSLVDVMLGRESLEGNNK--QPRDVFYDLVGVILHQGQTLGSGHYTFALHAGDESSASGGTEHSAASAEEADRENPGSVLVQGLVGEGEAGGSVAGGTSYTRPAFALFDDDVVRWLSLKEESAVLRGGGGAIGDPFLVFYARR 690
             G E+HPP G  S     RKRSRL L +RR + P Q   V  P++             +P   S +    A    +P G SP LSE  +  A            P   P PPFVGLKN+GETCYVN VLQ+L AC   L SSRG      G GG  +   +  EG  S+P A       A       ++ GV +GT  NPV  AL +VLGEM+ RNR L QQQ      + + + P     TG G+   P      P  +TPLR      + V   AIAP  LVELIR GWLSA+R+          RLG GG+ A G  +FG GQACVSELLGK L +            VV  GG  G  S G VG    G   +S  C LA AFRGTLCART CVECER+R +RE+FTELTLPPL+ P      P  +P L A     A +ND G   +      +T+Q+LVD +   ESL GNNK     DVFYDL+GVILHQGQTL SGHYTFALHA     A+G +                              GS  G     +P FALFDD  V WLS +EE AVLRGGGG  GDPFLVFYARR
Sbjct:   25 FGAENHPPVGSSSGVNRLRKRSRLCLGKRRRALPAQHAAVGQPSIGTAGSPSFQERFRSPFTSSAALAPPAEAIGYPWGASPGLSETCLDRAGVLAPAAWTIERPSSGPSPPFVGLKNLGETCYVNAVLQALTACHGVLTSSRG------GGGGWHDVGSEGSEGSCSTPPAADAAPAGAASEGTAVLVAGV-TGTQRNPVLAALEQVLGEMETRNRALSQQQLVAFGSQTAVSSPAEPESTGSGATSSPESKTCQPYDQTPLRPSASTGEGVLVEAIAPTFLVELIRGGWLSADRS----------RLGGGGAGATGSTEFGTGQACVSELLGKFLGL------------VVDDGGS-GATSLGGVGGRRSGGSHSSSFCCLAQAFRGTLCARTLCVECERDRTAREDFTELTLPPLLPP------PQHAPPLTAQGAIPAAENDGGPSLR---GRRRTMQTLVDGVFEGESLAGNNKLCDSGDVFYDLIGVILHQGQTLASGHYTFALHA-----AAGDSASFLEXXXXXXXXXXXXXXXXXXXXXXXXXGSTCG-----KPGFALFDDATVGWLSPEEERAVLRGGGGVFGDPFLVFYARR 579

[Close]

BLAST of mRNA_L-elsbetiae_contig1734.4853.1 vs. uniprot
Match: A0A6H5L2L7_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L7_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 1.860e-65
Identity = 203/570 (35.61%), Postives = 249/570 (43.68%), Query Frame = 0

Query:  248 GDGGTVEDRQKAYEGWGSSPAAPVRTADDAEISSVHTVLTGVRSGTDGNPVFFALGKVLGEMDARNRTLFQQQWPELPVELSTGP--EISSLTGGGSPEMPVHPS---GRTPLRLDVPARQDVCAGAIAPNALVELIREGWLSAERATGGATAGLVRRLGRGGSPAVG--DFGNGQACVSELLGKLLDVGAATAAXXXXXGVVHGGGELGDASSGSVGDLGSFDNSGVCSLAAAFRGTLCARTHCVECERERISREEFTELTLPPLVLPLQPLAQPHFSPRLAAAQGAEAVDNDTGDLSKLPPQETQTLQSLVDVMLGRESLEGNNK-----------------------------------------QPR-------------------------------------------------------------------------------DVFYDLVGVILHQGQTLGSGHYTFALHAGDESSASGGTEHSAASAEEADRENPGSVLVQGLVGEGEAGGSVAGGTSYTRPAFALFDDDVVRWLSLKEESAVLRGGGGAIGDPFLVFYARR 690
            G GG  +   +  EG  S+P A       A ++     + G  +GT  NPV  AL +VLGEM+ RNR LFQQQ      + +  P  E  S + G +            +TPLR      + V   +IAP +LVELI  GWLSA+RA          RLG GG+   G  DFG GQACVSELLGK L +      XXXXX                    G   +S  C LA AFRGTLCART CVECER+R +RE+FTELTLPPL+        P  +P L A +   A +ND G   +      +T+Q+L+D +  RESL GNNK                                          P+                                                                               D+FYDL+G ILHQGQTL SGHYTFA++A     AS   +        ADR+N      + LV +G  G + AG T Y +P FALFDD  VRWLSL+EE AVLRG GG  GDPFLVFYARR
Sbjct:    9 GGGGWHDVGSEGSEGVSSTPPAADAAPAGAALAGTAAPV-GRETGTQRNPVLVALEQVLGEMETRNRALFQQQLVAAGSQTAVSPPAEPESTSSGATSSAESKTCQWFDQTPLRPSASTGEGVRVESIAPTSLVELIHGGWLSADRA----------RLGGGGAGTTGSTDFGTGQACVSELLGKFLGLVVDDXXXXXXXXXXX-----------XXXRSGGTHSSSFCGLAQAFRGTLCARTLCVECERDRTAREDFTELTLPPLL-------PPQHAPPLTAQRAIPAAENDGGPSLR---GRHRTIQTLIDGVFERESLAGNNKVWCEACRQWTEAERRSSVHSPPGLLALHVRPGTRKRSSPCLYPKALARASGGAPDSVVGDVRRGADGRLPAGSREEAIERTLVVRKAARCQFHGGGVNSXXXXXXXXXXXSVDSCTGQLCDSGDIFYDLIGAILHQGQTLASGHYTFAINAAAGDWASFLAQQXXXXXXXADRDN------RALVQQGPPGATAAGST-YGKPDFALFDDATVRWLSLEEERAVLRGDGGGFGDPFLVFYARR 539

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig1734.4853.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig1734.4853.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FM48_ECTSI	1.170e-103	43.54	USP domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5L2L7_9PHAE	1.860e-65	35.61	USP domain-containing protein n=1 Tax=Ectocarpus s...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24006	FAMILY NOT NAMED	coord: 188..672
IPR018200	Ubiquitin specific protease, conserved site	PROSITE	PS00973	USP_2	coord: 574..592
IPR028889	Ubiquitin specific protease domain	PROSITE	PS50235	USP_3	coord: 211..690 score: 12.265
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	54001	Cysteine proteinases	coord: 207..690

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig1734	contig	L-elsbetiae_contig1734:6075..8588 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig1734.4853.1	mRNA_L-elsbetiae_contig1734.4853.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig1734 6075..8588 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig1734.4853.1 ID=prot_L-elsbetiae_contig1734.4853.1|Name=mRNA_L-elsbetiae_contig1734.4853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=692bp
MSQRYGTRSTTKAVHSRAPIVGNPPASEQSSSLAAAVPAGSSRHNPGAAA
AAAAAEEAPQPCTNGRGPLTAPPSPFVRLAVGVGEQRRQEPTPTTLMLPA
KRAIVAPSGAPASVLVPSTAGAAQIGEESHPPRGGESRRKRSRLSLSRRR
ASSPQQVVVAPAVFAPTGDSKSGGSCAVVGCFPGGISPRLSEGGVGSARR
SPRKSPPPPFVGLKNVGETCYVNTVLQSLAACRTALESSRGASGAAAGDG
GTVEDRQKAYEGWGSSPAAPVRTADDAEISSVHTVLTGVRSGTDGNPVFF
ALGKVLGEMDARNRTLFQQQWPELPVELSTGPEISSLTGGGSPEMPVHPS
GRTPLRLDVPARQDVCAGAIAPNALVELIREGWLSAERATGGATAGLVRR
LGRGGSPAVGDFGNGQACVSELLGKLLDVGAATAAAAAAAGVVHGGGELG
DASSGSVGDLGSFDNSGVCSLAAAFRGTLCARTHCVECERERISREEFTE
LTLPPLVLPLQPLAQPHFSPRLAAAQGAEAVDNDTGDLSKLPPQETQTLQ
SLVDVMLGRESLEGNNKQPRDVFYDLVGVILHQGQTLGSGHYTFALHAGD
ESSASGGTEHSAASAEEADRENPGSVLVQGLVGEGEAGGSVAGGTSYTRP
AFALFDDDVVRWLSLKEESAVLRGGGGAIGDPFLVFYARRK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR018200	USP_CS
IPR028889	USP_dom
IPR038765	Papain-like_cys_pep_sf