prot_L-elsbetiae_contig17082.4733.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig17082.4733.1
Unique Nameprot_L-elsbetiae_contig17082.4733.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length115
Homology
BLAST of mRNA_L-elsbetiae_contig17082.4733.1 vs. uniprot
Match: D7FR41_ECTSI (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR41_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 9.910e-30
Identity = 76/112 (67.86%), Postives = 82/112 (73.21%), Query Frame = 0
Query:    1 MTD-IMLSNWTMFMDAAGDVGGVMTARLFFYTFKVLTFYFVMPVMLGFIVQSYMAAQLPGGDPTN-KSGSSSHPRASSPVGVLSFRRRSHTDTGGGGGAAE-----ADPLLS 105
            MTD IMLSNW +FMDAAGDVG V+TA+LFFY+FKVLTFYFVMPVMLGFIVQSYMAA +PG D  N K   SS  RA S    LSF RRSH D GG GGA +     A PL S
Sbjct:  639 MTDVIMLSNWPLFMDAAGDVGNVVTAKLFFYSFKVLTFYFVMPVMLGFIVQSYMAAHIPGADSANNKPALSSSSRAVSDS--LSFSRRSHRDGGGRGGAEDGRGGSASPLSS 748          
BLAST of mRNA_L-elsbetiae_contig17082.4733.1 vs. uniprot
Match: A0A6H5L0T6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0T6_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.440e-27
Identity = 70/111 (63.06%), Postives = 79/111 (71.17%), Query Frame = 0
Query:    1 MTDI-MLSNWTMFMDAAGDVGGVMTARLFFYTFKVLTFYFVMPVMLGFIVQSYMAAQLPGGDPTNKSGSSSHPRASSPVGVLSFRRRSHTDTGGGGGAAE-----ADPLLS 105
            MTDI MLSNW +FMDAAGDVG V+TA++FFY+FKVLTFYFVMPVMLGFIVQSYMAA +PG D  N   + S    + P   LSF RRS  D GG GGA +     A PL S
Sbjct:  772 MTDIVMLSNWPLFMDAAGDVGNVVTAKIFFYSFKVLTFYFVMPVMLGFIVQSYMAAHIPGADSANNKPALSSSSRAIPH-SLSFSRRSPRDGGGRGGAEDGRGGPASPLSS 881          
BLAST of mRNA_L-elsbetiae_contig17082.4733.1 vs. uniprot
Match: D7FGS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGS1_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.310e-14
Identity = 36/55 (65.45%), Postives = 45/55 (81.82%), Query Frame = 0
Query:    4 IMLSNWTMFMDAAGDVGGVMTARLFFYTFKVLTFYFVMPVMLGFIVQSYMAAQLP 58
            +M SNW MFMDAAG VG ++ A++FFY+FK + FYFVMPV+LGFIV SYM A +P
Sbjct:  288 VMFSNWPMFMDAAGVVGNLVVAKVFFYSFKAIGFYFVMPVLLGFIVTSYMNAHVP 342          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17082.4733.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FR41_ECTSI9.910e-3067.86Voltage-gated Ion Channel (VIC) Superfamily n=1 Ta... [more]
A0A6H5L0T6_9PHAE1.440e-2763.06Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FGS1_ECTSI2.310e-1465.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..26
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 27..49
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 50..115
NoneNo IPR availableTMHMMTMhelixcoord: 27..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17082contigL-elsbetiae_contig17082:2486..3327 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17082.4733.1mRNA_L-elsbetiae_contig17082.4733.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig17082 2020..3327 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig17082.4733.1 ID=prot_L-elsbetiae_contig17082.4733.1|Name=mRNA_L-elsbetiae_contig17082.4733.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MTDIMLSNWTMFMDAAGDVGGVMTARLFFYTFKVLTFYFVMPVMLGFIVQ
SYMAAQLPGGDPTNKSGSSSHPRASSPVGVLSFRRRSHTDTGGGGGAAEA
DPLLSGSRSHGDKGG
back to top