prot_L-elsbetiae_contig17062.4728.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig17062.4728.1
Unique Nameprot_L-elsbetiae_contig17062.4728.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length163
Homology
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BLAST of mRNA_L-elsbetiae_contig17062.4728.1 vs. uniprot
Match: D7FK17_ECTSI (Novel Sm-like protein with long N-and C-terminal domains n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK17_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 4.030e-30
Identity = 73/90 (81.11%), Postives = 74/90 (82.22%), Query Frame = 0 
Query:   70 GSSTMRDQGLKPGRYQPPHKNPNWKPPPTVQRGPPGPXXXXXXXXXALPGQGNHLLNRRTRGAAGSPTDEDQEGEFDFEAGLAKFDKEKA 159
            GSSTMRDQGLKPGRYQPPHKNPNWKPPPTVQRGPPG XXXXXXXXXALPGQGNHLLNRRT               FDFEAGLAKFDKEK+
Sbjct:  137 GSSTMRDQGLKPGRYQPPHKNPNWKPPPTVQRGPPGXXXXXXXXXXALPGQGNHLLNRRTXXXXXXXXX--XXXXFDFEAGLAKFDKEKS 224
[Close]
BLAST of mRNA_L-elsbetiae_contig17062.4728.1 vs. uniprot
Match: A0A6H5KDD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDD7_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 8.830e-25
Identity = 68/89 (76.40%), Postives = 68/89 (76.40%), Query Frame = 0 
Query:   70 GSSTMRDQGLKPGRYQPPHKNPNWKPPPTVQRGPPGPXXXXXXXXXALPGQGNHLLNRRTRGAAGSPTDEDQEGEFDFEAGLAKFDKEK 158
            GS TMRDQGLKPGRYQPPHKNPNWKPPPTVQRGPPG XXXXXXXXX LPGQGNHLLNRRT                  EAGLAKFDKEK
Sbjct:  138 GSPTMRDQGLKPGRYQPPHKNPNWKPPPTVQRGPPGXXXXXXXXXXXLPGQGNHLLNRRTXXXXXXXXX--XXXXXXXEAGLAKFDKEK 224
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17062.4728.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK17_ECTSI4.030e-3081.11Novel Sm-like protein with long N-and C-terminal d... [more]
A0A6H5KDD7_9PHAE8.830e-2576.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025762DFDF domainPROSITEPS51512DFDFcoord: 133..162
score: 9.783

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17062contigL-elsbetiae_contig17062:1102..3508 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17062.4728.1mRNA_L-elsbetiae_contig17062.4728.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig17062 1102..3508 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig17062.4728.1 ID=prot_L-elsbetiae_contig17062.4728.1|Name=mRNA_L-elsbetiae_contig17062.4728.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
QTAEPPAPPPVAPTVETPPPPPATAPPATRVAPDAAAGGAEAAVQERVQA
AAAAVEENGDAAAEDAAGSGSSTMRDQGLKPGRYQPPHKNPNWKPPPTVQ
RGPPGPGSGAGSGTGALPGQGNHLLNRRTRGAAGSPTDEDQEGEFDFEAG
LAKFDKEKARLR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025762DFDF