prot_L-elsbetiae_contig1704.4721.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1704.4721.1
Unique Nameprot_L-elsbetiae_contig1704.4721.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length52
Homology
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BLAST of mRNA_L-elsbetiae_contig1704.4721.1 vs. uniprot
Match: D8LSC3_ECTSI (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC3_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 8.030e-16
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 0 
Query:    1 MASRVLDKKLKKVLDMRTDTPALLESLEAISTLFSDHNSTQAAGAAG---DGEKA 52
            MASRVLDKKLKKVLDMRTDTPALLESLEAISTLFSDH++  ++GAA    DGEKA
Sbjct:    1 MASRVLDKKLKKVLDMRTDTPALLESLEAISTLFSDHSTGSSSGAAATTADGEKA 55
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BLAST of mRNA_L-elsbetiae_contig1704.4721.1 vs. uniprot
Match: A0A6H5LBT5_9PHAE (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBT5_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 4.650e-15
Identity = 40/46 (86.96%), Postives = 44/46 (95.65%), Query Frame = 0 
Query:    1 MASRVLDKKLKKVLDMRTDTPALLESLEAISTLFSDHNSTQAAGAA 46
            MASRVLDKKLKKVLDMRTDTPALLESLEAISTLFSDH++  ++GAA
Sbjct:    1 MASRVLDKKLKKVLDMRTDTPALLESLEAISTLFSDHSTGSSSGAA 46
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1704.4721.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSC3_ECTSI8.030e-1681.82Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
A0A6H5LBT5_9PHAE4.650e-1586.96Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1704contigL-elsbetiae_contig1704:22419..22574 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1704.4721.1mRNA_L-elsbetiae_contig1704.4721.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1704 22130..22574 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1704.4721.1 ID=prot_L-elsbetiae_contig1704.4721.1|Name=mRNA_L-elsbetiae_contig1704.4721.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=52bp
MASRVLDKKLKKVLDMRTDTPALLESLEAISTLFSDHNSTQAAGAAGDGE
KA
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