prot_L-elsbetiae_contig16901.4628.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig16901.4628.1
Unique Nameprot_L-elsbetiae_contig16901.4628.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length219
Homology
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BLAST of mRNA_L-elsbetiae_contig16901.4628.1 vs. uniprot
Match: A0A6H5L2J9_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J9_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 6.930e-10
Identity = 103/205 (50.24%), Postives = 110/205 (53.66%), Query Frame = 0 
Query:    1 MHLYLWASLAGSCLLRPGFSLIGKDGQGRKCSSQQHPAPRSSN-SXXXXXXXXXXXVMAAFVAAPPLM----ERYGGRSLPGTTA------IADSRHQHLPGPVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPS--WRLCAARVNTDDDDY--FSDRGRTDPPAPAQRSGRPAVRGNNGGXXXXXXXRPGSGAGRGVAVR 190
            MHLYLWASLAGSCLL PG SL+G    G  CS +      S   SXXXXXXXXXXX        PP +    +R G    PGTT       +A  + Q        XXXXXXXXXXXXXXXXXXXX          PPS  WRL AAR    D     + DRGRTDPP  A   GRP VRGN          RPGSGAGRGV  R
Sbjct:    1 MHLYLWASLAGSCLLHPGLSLLGGGDGG--CSGENGVGIDSRRRSXXXXXXXXXXXXXXXXXXXPPRLLARSQRSGRLYSPGTTEMTLTGLVATRQQQCSXXXXXXXXXXXXXXXXXXXXXXXXXXSTPRSRVLPLPPSPSWRLYAARRANPDXXXXXYDDRGRTDPPTVAP--GRPPVRGNA--PASRARGRPGSGAGRGVGGR 199
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16901.4628.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2J9_9PHAE6.930e-1050.24SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..219
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.477

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16901contigL-elsbetiae_contig16901:2431..3087 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16901.4628.1mRNA_L-elsbetiae_contig16901.4628.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig16901 2403..3087 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig16901.4628.1 ID=prot_L-elsbetiae_contig16901.4628.1|Name=mRNA_L-elsbetiae_contig16901.4628.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=219bp
MHLYLWASLAGSCLLRPGFSLIGKDGQGRKCSSQQHPAPRSSNSRRRAPT
TTSTSVMAAFVAAPPLMERYGGRSLPGTTAIADSRHQHLPGPVAAAAAAG
AAVAAGQRIMLTPTTARTRLQQPQPPPSWRLCAARVNTDDDDYFSDRGRT
DPPAPAQRSGRPAVRGNNGGGGGRGGGRPGSGAGRGVAVRAGPSSGRGID
QNDPLVRDWQSAKVLAGKG
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