prot_L-elsbetiae_contig16348.4320.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig16348.4320.1
Unique Nameprot_L-elsbetiae_contig16348.4320.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length89
Homology
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BLAST of mRNA_L-elsbetiae_contig16348.4320.1 vs. uniprot
Match: A0A6H5JDS2_9PHAE (PAPS_reduct domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDS2_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 6.500e-5
Identity = 37/72 (51.39%), Postives = 43/72 (59.72%), Query Frame = 0 
Query:   22 TSASSGKACLQPDRKVRGGGWRGLAGLIGW----LPGTTVVLALVLAAVGLRSSAGSSRGAGH-GTAPGKRD 88
            T  S   ACL P  K RG G      L+GW    LP TT+ LALV AAVG+RS++GSSRG  H  +AP K D
Sbjct:  347 TGPSGNGACLPPPVKERGEG-----SLVGWVGSLLPVTTIALALVAAAVGVRSTSGSSRGGVHDNSAPHKGD 413
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16348.4320.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDS2_9PHAE6.500e-551.39PAPS_reduct domain-containing protein n=2 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 69..88
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..47
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 48..68
NoneNo IPR availableTMHMMTMhelixcoord: 44..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16348contigL-elsbetiae_contig16348:2491..2757 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16348.4320.1mRNA_L-elsbetiae_contig16348.4320.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig16348 2491..3747 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig16348.4320.1 ID=prot_L-elsbetiae_contig16348.4320.1|Name=mRNA_L-elsbetiae_contig16348.4320.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
ASGGAGGIIRTSTSTSTTSITTSASSGKACLQPDRKVRGGGWRGLAGLIG
WLPGTTVVLALVLAAVGLRSSAGSSRGAGHGTAPGKRD*
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