prot_L-elsbetiae_contig16344.4318.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig16344.4318.1
Unique Nameprot_L-elsbetiae_contig16344.4318.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length38
Homology
BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Match: A0A6H5KZ19_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZ19_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 7.400e-8
Identity = 18/25 (72.00%), Postives = 21/25 (84.00%), Query Frame = 0
Query:   11 WTCPICLNWFDMPVSPPCGHSFCAG 35
            W+CP+C  WFDMPV PPC H+FCAG
Sbjct:   29 WSCPVCFMWFDMPVFPPCQHTFCAG 53          
BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Match: A0A8C5AB53_GADMO (zf-RING_UBOX domain-containing protein n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5AB53_GADMO)

HSP 1 Score: 47.4 bits (111), Expect = 3.330e-6
Identity = 17/26 (65.38%), Postives = 22/26 (84.62%), Query Frame = 0
Query:    8 EANWTCPICLNWFDMPVSPPCGHSFC 33
            E N++CPICL+ F+ PVS PCGH+FC
Sbjct:   10 EENFSCPICLDVFNSPVSTPCGHNFC 35          
BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Match: A0A8C5ASR7_GADMO (Uncharacterized protein n=3 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5ASR7_GADMO)

HSP 1 Score: 48.9 bits (115), Expect = 1.520e-5
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 0
Query:    2 STAEEQEANWTCPICLNWFDMPVSPPCGHSFC 33
            +T    E N++CPICL+ F+ PVS PCGH+FC
Sbjct:  271 ATTSGSEENFSCPICLDVFNSPVSTPCGHNFC 302          
BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Match: A0A8C4ZUT0_GADMO (Uncharacterized protein n=2 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4ZUT0_GADMO)

HSP 1 Score: 48.9 bits (115), Expect = 1.520e-5
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 0
Query:    2 STAEEQEANWTCPICLNWFDMPVSPPCGHSFC 33
            +T    E N++CPICL+ F+ PVS PCGH+FC
Sbjct:    4 ATTSGSEENFSCPICLDVFNSPVSTPCGHNFC 35          
BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Match: UPI0011B813A6 (E3 ubiquitin-protein ligase TRIM47-like isoform X2 n=1 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B813A6)

HSP 1 Score: 48.9 bits (115), Expect = 1.530e-5
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 0
Query:    2 STAEEQEANWTCPICLNWFDMPVSPPCGHSFC 33
            +T    E N++CPICL+ F+ PVS PCGH+FC
Sbjct:   19 ATTSGSEENFSCPICLDVFNSPVSTPCGHNFC 50          
BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Match: A0A8C4ZYA1_GADMO (Uncharacterized protein n=2 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4ZYA1_GADMO)

HSP 1 Score: 48.1 bits (113), Expect = 2.840e-5
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 0
Query:    2 STAEEQEANWTCPICLNWFDMPVSPPCGHSFC 33
            S +   E N++CPICL+ F+ PVS PCGH+FC
Sbjct:   41 SNSSWSEENFSCPICLDVFNSPVSTPCGHNFC 72          
BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Match: A0A087XY97_POEFO (E3 ubiquitin-protein ligase TRIM21-like n=10 Tax=Poeciliinae TaxID=586240 RepID=A0A087XY97_POEFO)

HSP 1 Score: 47.4 bits (111), Expect = 5.330e-5
Identity = 20/33 (60.61%), Postives = 23/33 (69.70%), Query Frame = 0
Query:    1 LSTAEEQEANWTCPICLNWFDMPVSPPCGHSFC 33
            LS+A   E  +TC ICL  F+ PVS PCGHSFC
Sbjct:    3 LSSAFLSEDQFTCSICLEMFNNPVSTPCGHSFC 35          
BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Match: A0A8C5B4R7_GADMO (Uncharacterized protein n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5B4R7_GADMO)

HSP 1 Score: 47.4 bits (111), Expect = 5.330e-5
Identity = 17/26 (65.38%), Postives = 22/26 (84.62%), Query Frame = 0
Query:    8 EANWTCPICLNWFDMPVSPPCGHSFC 33
            E N++CPICL+ F+ PVS PCGH+FC
Sbjct:   41 EENFSCPICLDVFNSPVSTPCGHNFC 66          
BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Match: UPI0011B61885 (E3 ubiquitin-protein ligase TRIM39-like n=1 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B61885)

HSP 1 Score: 47.4 bits (111), Expect = 5.330e-5
Identity = 17/26 (65.38%), Postives = 22/26 (84.62%), Query Frame = 0
Query:    8 EANWTCPICLNWFDMPVSPPCGHSFC 33
            E N++CPICL+ F+ PVS PCGH+FC
Sbjct:   10 EENFSCPICLDVFNSPVSTPCGHNFC 35          
BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Match: UPI0011B84FE6 (E3 ubiquitin-protein ligase TRIM47-like n=1 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B84FE6)

HSP 1 Score: 47.4 bits (111), Expect = 5.350e-5
Identity = 17/26 (65.38%), Postives = 22/26 (84.62%), Query Frame = 0
Query:    8 EANWTCPICLNWFDMPVSPPCGHSFC 33
            E N++CPICL+ F+ PVS PCGH+FC
Sbjct:   10 EENFSCPICLDVFNSPVSTPCGHNFC 35          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16344.4318.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KZ19_9PHAE7.400e-872.00RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A8C5AB53_GADMO3.330e-665.38zf-RING_UBOX domain-containing protein n=1 Tax=Gad... [more]
A0A8C5ASR7_GADMO1.520e-556.25Uncharacterized protein n=3 Tax=Gadus morhua TaxID... [more]
A0A8C4ZUT0_GADMO1.520e-556.25Uncharacterized protein n=2 Tax=Gadus morhua TaxID... [more]
UPI0011B813A61.530e-556.25E3 ubiquitin-protein ligase TRIM47-like isoform X2... [more]
A0A8C4ZYA1_GADMO2.840e-556.25Uncharacterized protein n=2 Tax=Gadus morhua TaxID... [more]
A0A087XY97_POEFO5.330e-560.61E3 ubiquitin-protein ligase TRIM21-like n=10 Tax=P... [more]
A0A8C5B4R7_GADMO5.330e-565.38Uncharacterized protein n=1 Tax=Gadus morhua TaxID... [more]
UPI0011B618855.330e-565.38E3 ubiquitin-protein ligase TRIM39-like n=1 Tax=Ga... [more]
UPI0011B84FE65.350e-565.38E3 ubiquitin-protein ligase TRIM47-like n=1 Tax=Ga... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 2..35
e-value: 2.2E-10
score: 41.9
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 13..34
e-value: 2.2E-8
score: 34.0
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 6..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16344contigL-elsbetiae_contig16344:327..440 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16344.4318.1mRNA_L-elsbetiae_contig16344.4318.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig16344 327..440 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig16344.4318.1 ID=prot_L-elsbetiae_contig16344.4318.1|Name=mRNA_L-elsbetiae_contig16344.4318.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=38bp
LSTAEEQEANWTCPICLNWFDMPVSPPCGHSFCAGVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR027370Znf-RING_LisH