prot_L-elsbetiae_contig1628.4289.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1628.4289.1
Unique Nameprot_L-elsbetiae_contig1628.4289.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length158
Homology
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BLAST of mRNA_L-elsbetiae_contig1628.4289.1 vs. uniprot
Match: D8LTI1_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTI1_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 4.500e-33
Identity = 87/150 (58.00%), Postives = 99/150 (66.00%), Query Frame = 0 
Query:    1 MIKRDLIGAVFALKRSLALEPGTTKIMVYLGKVYLELASKALENLSAWAGQGNGGIDFELDGTPH-DGGENEIIGEVIPS--IRSMSPGSLLSSAEMYIDQALVAGSGLPLARLVKGEVLALGRQHQSAAALFQESIDIYNSTFSPAGAA 147
            MI+RD +GAV AL+RSL LEP  TK+MVYLG+VYLEL  K LE L      GNG +D   D T H DGG     G+   S  +RS S  SLLSSAE+  D+AL AG+GLPLARLVKG+ LAL  QHQSAA  FQESIDI     S   AA
Sbjct:   85 MIQRDHLGAVSALERSLRLEPSNTKVMVYLGQVYLELTLKRLEPLPQ-RDHGNG-VDAGFDDTQHHDGGAIAGDGQTDASNDMRSSSAESLLSSAELNTDRALAAGTGLPLARLVKGQALALRGQHQSAAKFFQESIDISRRLLSGRSAA 232
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1628.4289.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTI1_ECTSI4.500e-3358.00TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..157

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1628contigL-elsbetiae_contig1628:6437..7967 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1628.4289.1mRNA_L-elsbetiae_contig1628.4289.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1628 5369..8019 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1628.4289.1 ID=prot_L-elsbetiae_contig1628.4289.1|Name=mRNA_L-elsbetiae_contig1628.4289.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
MIKRDLIGAVFALKRSLALEPGTTKIMVYLGKVYLELASKALENLSAWAG
QGNGGIDFELDGTPHDGGENEIIGEVIPSIRSMSPGSLLSSAEMYIDQAL
VAGSGLPLARLVKGEVLALGRQHQSAAALFQESIDIYNSTFSPAGAAAAA
VATQRAW*
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