prot_L-elsbetiae_contig1620.4256.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig1620.4256.1
Unique Name	prot_L-elsbetiae_contig1620.4256.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	362

Homology

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BLAST of mRNA_L-elsbetiae_contig1620.4256.1 vs. uniprot
Match: D8LNL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL8_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 9.970e-87
Identity = 206/355 (58.03%), Postives = 226/355 (63.66%), Query Frame = 0

Query:    7 GGGYSTYGAPDYHPHHAQAPRGHGGQHGGYVPSPSYSTTHTSSYGGANPHYAGGPTERSLSPSSAQGERPPMFSSPQGGPVPGG-----------RETHGREHGGSRPQEGPPGANLFIYHLPNDLTDADLATAFAPFGHVVSAKVFLDKRTGESKGFGFVSYNHPSEAEVAIAKMNGFQIGSKRLKVQHKKSDHGESRDHDGGASMRYPGH---------SQQQQHQXXXXXXXXXXXXXXXXXHTMAPLHGGSGRLGMGYGSAGAGGPP----DASPEMRGYRSHP--GESGKVMFTSAGDTRTIYGPGVAPPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXYRGSVKPEPMG 335
            GGGYS    P+Y PHH   P+    +HGGYV           +Y   NP +     +RSLSPSS  G+R   FSSP GGPVPGG               G   GG+RPQEGPPGANLFIYHLPNDLTDADLATAFAPFGHVVSAKVFLDKRT ESKGFGFVSYNHP+EAEVAI+KMNGFQIGSKRLKVQHKK+DHG+ R+H+  + +RYPGH         S QQQ                   H MAPLHGGSGRLGMGY             DASPEMRGY S     +S KVM+T  GDTRTIY  G  P SS   XXXXXXXXXXXXXXXXXX      YR +VKP P+G
Sbjct:  226 GGGYSQSYGPEY-PHHPGQPQA---RHGGYV-----------AYSNLNPSHYPAQVDRSLSPSSGAGDRSHNFSSPPGGPVPGGIGXXXXXXXXXXXXRGEHGGGARPQEGPPGANLFIYHLPNDLTDADLATAFAPFGHVVSAKVFLDKRTQESKGFGFVSYNHPAEAEVAISKMNGFQIGSKRLKVQHKKADHGD-REHE--SPLRYPGHHGPPRDMQGSMQQQQ------------------HGMAPLHGGSGRLGMGYXXXXXXXXXXXXXDASPEMRGYHSXXXXSDSSKVMYTGGGDTRTIYA-GPVPSSSYDGXXXXXXXXXXXXXXXXXXG-----YRVNVKPGPVG 538

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BLAST of mRNA_L-elsbetiae_contig1620.4256.1 vs. uniprot
Match: A0A6H5K6C9_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6C9_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 9.780e-83
Identity = 185/344 (53.78%), Postives = 208/344 (60.47%), Query Frame = 0

Query:    7 GGGYSTYGAPDYHPHHAQAPRGHGGQHGGYVPSPSYSTTHTSSYGGANPHYAGGPTERSLSPSSAQGERPPMFSSPQGGPVPGG----------RETHGREHGGSRPQEGPPGANLFIYHLPNDLTDADLATAFAPFGHVVSAKVFLDKRTGESKGFGFVSYNHPSEAEVAIAKMNGFQIGSKRLKVQHKKSDHGESRDHDGGASMRYPGHSQQQQHQXXXXXXXXXXXXXXXXXHTMAPLHGGSGRLGMGYGSAGAGGPP----DASPEMRGYRSHPGES-GKVMFTSAGDTRTIYGPGVAPPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXYRGSVKPEPMG 335
            GGGYS    P+YH H    P+    +HGGYV   +YS+ H S Y            +RSLSPSS  G+R   F+SP GG VPGG          R++ G   GG+RPQEGPPGANLFIYHLPNDLTDADLATAFAPFGHVVSAKVFLDKRT ESKGFGFVSYNHP+EAE+AI+KMNGFQIGSKRLKVQHKK+DHG+ RDH+  + +RYP H                         +MAPLHGGSGRLGM               DASPEMRGY S    S  KVM+T  GDTRTIY  G  P SS   XXXXX                   YR +VKP P+G
Sbjct:   71 GGGYSQSYGPEYH-HPPGQPQA---RHGGYV---AYSSLHPSHYPAQ--------VDRSLSPSSGAGDRSQNFTSPPGGSVPGGIGMGGMRGDGRDSRGDHGGGARPQEGPPGANLFIYHLPNDLTDADLATAFAPFGHVVSAKVFLDKRTQESKGFGFVSYNHPAEAELAISKMNGFQIGSKRLKVQHKKADHGD-RDHE--SPLRYPVHH---------GPPRDMQGPMQQQQQSMAPLHGGSGRLGMXXXXXXXXXXXXXXXDASPEMRGYHSXXXSSDSKVMYTGGGDTRTIYA-GPVPSSSYDGXXXXXRGGMPEDSTSGAGG-----YRVNVKPGPVG 381

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BLAST of mRNA_L-elsbetiae_contig1620.4256.1 vs. uniprot
Match: A0A7S2A4L6_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A4L6_TRICV)

HSP 1 Score: 147 bits (370), Expect = 6.550e-40
Identity = 75/109 (68.81%), Postives = 89/109 (81.65%), Query Frame = 0

Query:   79 FSSPQGGPVPGGRETHGREHGGSRPQEGPPGANLFIYHLPNDLTDADLATAFAPFGHVVSAKVFLDKRTGESKGFGFVSYNHPSEAEVAIAKMNGFQIGSKRLKVQHKK 187
            +SSP GG +P  R+     H G RP EGP GANLFIYHLP+DLTDADLATAF PFG+V+SAKV++D+ TGESKGFGFVSY+    AE+AI +MNGFQIG+KRLKVQHK+
Sbjct:    9 YSSP-GGQLPDHRQYAPNPHTGPRPLEGPAGANLFIYHLPHDLTDADLATAFTPFGNVISAKVYVDRITGESKGFGFVSYDSVVSAELAIEQMNGFQIGNKRLKVQHKR 116

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BLAST of mRNA_L-elsbetiae_contig1620.4256.1 vs. uniprot
Match: A0A7S2XYF3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYF3_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.450e-39
Identity = 70/87 (80.46%), Postives = 81/87 (93.10%), Query Frame = 0

Query:  101 SRPQEGPPGANLFIYHLPNDLTDADLATAFAPFGHVVSAKVFLDKRTGESKGFGFVSYNHPSEAEVAIAKMNGFQIGSKRLKVQHKK 187
            +RP EGPPGANLFIYHLP+DLTDADLATAF+PFG+V+SAKV++DK TG+SKGFGFVSY+ PS AE AI+ MNGFQIGSKRLKVQHK+
Sbjct:   11 TRPLEGPPGANLFIYHLPHDLTDADLATAFSPFGNVISAKVYVDKNTGQSKGFGFVSYDMPSSAETAISNMNGFQIGSKRLKVQHKR 97

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BLAST of mRNA_L-elsbetiae_contig1620.4256.1 vs. uniprot
Match: D7FV60_ECTSI (Trinucleotide repeat containing 4, isoform CRA_d n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV60_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 6.100e-38
Identity = 71/87 (81.61%), Postives = 81/87 (93.10%), Query Frame = 0

Query:  101 SRPQEGPPGANLFIYHLPNDLTDADLATAFAPFGHVVSAKVFLDKRTGESKGFGFVSYNHPSEAEVAIAKMNGFQIGSKRLKVQHKK 187
            +RP EGPPGANLFIYHLP DL+DADLATAFAPFGHV+SAKV++D+ +GESKGFGFVSY+ PS AE AIA+MNGFQIGSKRLKVQHK+
Sbjct:  361 TRPAEGPPGANLFIYHLPQDLSDADLATAFAPFGHVLSAKVYIDRASGESKGFGFVSYSLPSHAEAAIAQMNGFQIGSKRLKVQHKR 447

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BLAST of mRNA_L-elsbetiae_contig1620.4256.1 vs. uniprot
Match: A0A6T7KDJ9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7KDJ9_9STRA)

HSP 1 Score: 140 bits (352), Expect = 3.440e-37
Identity = 66/86 (76.74%), Postives = 77/86 (89.53%), Query Frame = 0

Query:  102 RPQEGPPGANLFIYHLPNDLTDADLATAFAPFGHVVSAKVFLDKRTGESKGFGFVSYNHPSEAEVAIAKMNGFQIGSKRLKVQHKK 187
            RP EGPPGANLFIYHLP+DLTDADLATAF PFG+V+SAKV++D+ TGESKGFGFVSY+  + A  AI +MNGFQIG+KRLKVQHK+
Sbjct:   37 RPSEGPPGANLFIYHLPHDLTDADLATAFNPFGNVISAKVYVDRFTGESKGFGFVSYDSGTSANQAIEQMNGFQIGNKRLKVQHKR 122

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BLAST of mRNA_L-elsbetiae_contig1620.4256.1 vs. uniprot
Match: A0A7S1E386_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E386_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.180e-36
Identity = 65/86 (75.58%), Postives = 77/86 (89.53%), Query Frame = 0

Query:  102 RPQEGPPGANLFIYHLPNDLTDADLATAFAPFGHVVSAKVFLDKRTGESKGFGFVSYNHPSEAEVAIAKMNGFQIGSKRLKVQHKK 187
            RP+EGP GANLF+YHLP+DLTDADLATAF PFG+V+SAKV++D+ TGESKGFGFVSY+    AE AI +MNGFQIG+KRLKVQHK+
Sbjct:   39 RPREGPAGANLFVYHLPHDLTDADLATAFNPFGNVISAKVYVDRNTGESKGFGFVSYDSVVSAESAIEQMNGFQIGNKRLKVQHKR 124

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BLAST of mRNA_L-elsbetiae_contig1620.4256.1 vs. uniprot
Match: A0A7S1BYN5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BYN5_9STRA)

HSP 1 Score: 148 bits (374), Expect = 3.470e-36
Identity = 78/114 (68.42%), Postives = 91/114 (79.82%), Query Frame = 0

Query:   77 PMFSSPQGGPVPGGRETHGREHG---GSRPQEGPPGANLFIYHLPNDLTDADLATAFAPFGHVVSAKVFLDKRTGESKGFGFVSYNHPSEAEVAIAKMNGFQIGSKRLKVQHKK 187
            P   SP+  P PG    H R  G    +RP+EGPPGANLFIYHLP+DLTDADLATAFAPFG+V+SAKV++DK TGESKGFGFVSY+  + A+ AI +MNGFQIGSKRLKVQHK+
Sbjct:  423 PSRGSPRTSPAPGKVYQH-RSDGPNTNTRPKEGPPGANLFIYHLPHDLTDADLATAFAPFGNVISAKVYVDKFTGESKGFGFVSYDVVTSADAAIEQMNGFQIGSKRLKVQHKR 535

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BLAST of mRNA_L-elsbetiae_contig1620.4256.1 vs. uniprot
Match: A0A6U4FNS3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FNS3_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.440e-35
Identity = 79/136 (58.09%), Postives = 94/136 (69.12%), Query Frame = 0

Query:   53 ANPHYAGGPTERSLSPSSAQGERPPMFSSPQGGPVPGGRETHGREHGGSRPQEGPPGANLFIYHLPNDLTDADLATAFAPFGHVVSAKVFLDKRTGESKGFGFVSYNHPSEAEVAIAKMNGFQIGSKRLKVQHKKS 188
            A P  AG P   S     ++G  P   S     PVP    +   + G  RP EGP GANLFIYHLP+D+TDADLAT F+PFG+V+SAKV++DK TGESKGFGFVSY+    AE AIA MNGFQIG+KRLKVQHK++
Sbjct:  436 AEPVVAGAPQGASGERGRSRGRSPKKRS-----PVPTNSRSRTPDAGKERPPEGPAGANLFIYHLPHDVTDADLATVFSPFGNVISAKVYMDKETGESKGFGFVSYDEADAAEAAIAAMNGFQIGTKRLKVQHKRT 566

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BLAST of mRNA_L-elsbetiae_contig1620.4256.1 vs. uniprot
Match: T0QG38_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QG38_SAPDV)

HSP 1 Score: 143 bits (361), Expect = 2.660e-35
Identity = 72/104 (69.23%), Postives = 82/104 (78.85%), Query Frame = 0

Query:  105 EGPPGANLFIYHLPNDLTDADLATAFAPFGHVVSAKVFLDKRTGESKGFGFVSYNHPSEAEVAIAKMNGFQIGSKRLKVQHKKSDHGESRDHDGGASMRYPGHS 208
            EGP GANLFIYHLP+DLTDADLATAFAPFG V+SAKVF+DK TGESKGFGFVSY+    A+ AIA MNGFQIGSKRLKVQHK+  H +    D  + + +  HS
Sbjct:  335 EGPAGANLFIYHLPHDLTDADLATAFAPFGTVISAKVFMDKNTGESKGFGFVSYDSVQAADAAIASMNGFQIGSKRLKVQHKRVHHRDDYGDDDESGLDHAVHS 438

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig1620.4256.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig1620.4256.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LNL8_ECTSI	9.970e-87	58.03	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K6C9_9PHAE	9.780e-83	53.78	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A7S2A4L6_TRICV	6.550e-40	68.81	Hypothetical protein (Fragment) n=1 Tax=Trieres ch...	[more]
A0A7S2XYF3_9STRA	2.450e-39	80.46	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
D7FV60_ECTSI	6.100e-38	81.61	Trinucleotide repeat containing 4, isoform CRA_d n...	[more]
A0A6T7KDJ9_9STRA	3.440e-37	76.74	Hypothetical protein n=1 Tax=Attheya septentrional...	[more]
A0A7S1E386_9STRA	1.180e-36	75.58	Hypothetical protein n=1 Tax=Thalassionema nitzsch...	[more]
A0A7S1BYN5_9STRA	3.470e-36	68.42	Hypothetical protein n=1 Tax=Corethron hystrix Tax...	[more]
A0A6U4FNS3_9STRA	1.440e-35	58.09	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]
T0QG38_SAPDV	2.660e-35	69.23	Uncharacterized protein n=1 Tax=Saprolegnia diclin...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 111..184 e-value: 2.7E-25 score: 100.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 112..182 e-value: 9.4E-20 score: 70.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 110..188 score: 18.41
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 91..196 e-value: 1.7E-27 score: 97.6
None	No IPR available	PANTHER	PTHR24012	RNA BINDING PROTEIN	coord: 85..191
None	No IPR available	PANTHER	PTHR24012:SF686	CUGBP ELAV-LIKE FAMILY MEMBER 1	coord: 85..191
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 103..213

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig1620	contig	L-elsbetiae_contig1620:18146..23334 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig1620.4256.1	mRNA_L-elsbetiae_contig1620.4256.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig1620 18146..23346 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig1620.4256.1 ID=prot_L-elsbetiae_contig1620.4256.1|Name=mRNA_L-elsbetiae_contig1620.4256.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=362bp
MGGAGGGGGYSTYGAPDYHPHHAQAPRGHGGQHGGYVPSPSYSTTHTSSY
GGANPHYAGGPTERSLSPSSAQGERPPMFSSPQGGPVPGGRETHGREHGG
SRPQEGPPGANLFIYHLPNDLTDADLATAFAPFGHVVSAKVFLDKRTGES
KGFGFVSYNHPSEAEVAIAKMNGFQIGSKRLKVQHKKSDHGESRDHDGGA
SMRYPGHSQQQQHQHHGGARDMHQPMQQQQQHTMAPLHGGSGRLGMGYGS
AGAGGPPDASPEMRGYRSHPGESGKVMFTSAGDTRTIYGPGVAPPSSSYD
GGASAGGAGGGAGLADDSSAGGGGYRGSVKPEPMGHQLQHQHSSAGGVGG
GGGEGGGDANNV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf