prot_L-elsbetiae_contig1614.4216.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1614.4216.1
Unique Nameprot_L-elsbetiae_contig1614.4216.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length385
Homology
BLAST of mRNA_L-elsbetiae_contig1614.4216.1 vs. uniprot
Match: A0A6H5JNA9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNA9_9PHAE)

HSP 1 Score: 330 bits (845), Expect = 3.790e-105
Identity = 217/375 (57.87%), Postives = 265/375 (70.67%), Query Frame = 0
Query:    1 KNPHLPRTGPLSFCPLGDVSDGEDTEFVGSAVPMTKNEEAEPILPLGEVSIDGAKVKEIGVIISLVEADGTIVIEGDIP-ALEEGCVLSACVAELQADG--TYEATGPKEPLGRINEVFGPCASPHYTVRVEGAATQHQLVAKYQVALKKLLKAEKERAAAKKEEADRVAAEVAAAEKEEALKDPLFALMAAADAEEKAAXXXXXXXXXXXXXXXXXXXXQVRXXXXXXXXXXXTPNPNNDENLQELRGLLKKAEEGMGARKQHPFSKWKIGAKVYALEDAKCLAAKSIEEAKEAKGTDASNQHDEEAEEEDFSDDEQEKLAVVKAKQAKKRLDLAMQGVLPDEIERIMAEEKRVLDAKHAKRDANNAAANAFRA 372
            K+PHLP TGPLS  P+GDVSDGED EF+GSA+PMTK+EE EPILPLGEVS DGA+V+E+G I+SLVEADGTIV++G     L+EGCVL++ V E + +G  + EATG  EPLGRI+E+FGPCA PHYTVRV+GAA QHQLV +YQVALKKLL+ EKERA       ++  AE A A    AL+DP               XXXXXXXXXXXXXX      Q+R            PNPNND+ L+E+R ++  A+E M  R  HPFS+WK G  VYAL++A+ L  + I      KGTDASN HDEEA+EE+FSDDEQE LA+ +AK+ KKR DLAM+GVLPDEI+ I+A E+ +   K AKRDA+NAAA   RA
Sbjct:  180 KDPHLPLTGPLSIRPIGDVSDGEDEEFMGSALPMTKHEELEPILPLGEVSFDGAEVQEVGKILSLVEADGTIVVQGKPGLVLDEGCVLASRVVEPKENGEPSGEATGATEPLGRIHEIFGPCALPHYTVRVQGAAVQHQLVVRYQVALKKLLQMEKERADEHMAVIEKRVAEEAEAA---ALRDPAIXXXXXXXXXXXXXXXXXXXXXXXXXXXAPMTGAQIREEAMRRARAKE-PNPNNDQKLEEIRKVVADAQEAMLTRDLHPFSRWKTGTTVYALKNAQMLQKEKI---LHDKGTDASNCHDEEADEEEFSDDEQEMLAIARAKEKKKRDDLAMKGVLPDEIDAIIAGEQEMRRQKKAKRDASNAAAKRGRA 547          
BLAST of mRNA_L-elsbetiae_contig1614.4216.1 vs. uniprot
Match: D8LTG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTG9_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 3.480e-75
Identity = 158/273 (57.88%), Postives = 196/273 (71.79%), Query Frame = 0
Query:    1 KNPHLPRTGPLSFCPLGDVSDGEDTEFVGSAVPMTKNEEAEPILPLGEVSIDGAKVKEIGVIISLVEADGTIVIEGDIP-ALEEGCVLSACVAELQADG--TYEATGPKEPLGRINEVFGPCASPHYTVRVEGAATQHQLVAKYQVALKKLLKAEKERAAAKKEEADRVAAEVAAAEKEEALKDPLFALMAAADAEEKAAXXXXXXXXXXXXXXXXXXXXQVRXXXXXXXXXXXTPNPNNDENLQELRGLLKKAEEGMGARKQHPFSKWKIGA 270
            K+PHLP TGPLS  P+GDVSDGED EF+G+A+PMTKNEE EPILPLGEVS+DGA+V+E+G I+SLVEADGTIV++G     L+EGCVL++ V E + +G  + EATG  EPLGRI+E+FGPCA PHYTVRV+GAA QHQ+V +YQVALKKLL+ EKERA A     ++   E A A    AL+DP  A+ A   A +   XXXXXXXXXXXXXX      Q+R            PNPNND+ L+++R ++  A+E M  R  HPFS+WK GA
Sbjct:  181 KDPHLPLTGPLSIRPIGDVSDGEDEEFMGAALPMTKNEELEPILPLGEVSLDGAEVQEVGKILSLVEADGTIVVQGKPGLVLDEGCVLASRVVEPKENGEPSGEATGATEPLGRIHEIFGPCALPHYTVRVQGAAVQHQVVVRYQVALKKLLQMEKERADAHMAVIEKRVEEEAEAA---ALRDPAIAIAAEEAALKXXXXXXXXXXXXXXXXXAPMTGAQIREDAMRRSRAKKKPNPNNDQKLEDIRKVVVDAQEAMLTRDLHPFSRWKNGA 450          
BLAST of mRNA_L-elsbetiae_contig1614.4216.1 vs. uniprot
Match: A0A835ZC78_9STRA (Gar1/Naf1 RNA binding region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC78_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.330e-8
Identity = 45/125 (36.00%), Postives = 68/125 (54.40%), Query Frame = 0
Query:   16 LGDVSDGEDTEFVGSAVPMTKNEEAEPILPLGEVSID--GAKVKEIGVIISLVEADGTIVIEGD--IPALEEGCVLSACVAELQADGTYEATGP-------KEPLGRINEVFGPCASPHYTVRVE 129
            + + +D E  + V  A P T NE   PI PL   ++D   A+++ IG + ++V A+  I++ GD  + AL+EG VL  C     A+G              +  LGR++EVFGP A+PHY VRV+
Sbjct:  228 VDEDADEEAADAVSKAPPRTVNEVDVPIEPLAPDAVDLATAQLEPIGEVTAVVVAERVIIVRGDAGVGALDEGSVL--CADAPPAEGXXXXXXXXXXXXERRVALGRVHEVFGPVAAPHYVVRVD 350          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1614.4216.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JNA9_9PHAE3.790e-10557.87Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LTG9_ECTSI3.480e-7557.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZC78_9STRA3.330e-836.00Gar1/Naf1 RNA binding region-domain-containing pro... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 189..209
NoneNo IPR availableCOILSCoilCoilcoord: 141..176
NoneNo IPR availablePANTHERPTHR31633:SF1H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1coord: 30..383
IPR038664H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domainGENE3D2.40.10.230coord: 31..147
e-value: 2.4E-7
score: 32.5
IPR007504H/ACA ribonucleoprotein complex, subunit Gar1/Naf1PFAMPF04410Gar1coord: 264..326
e-value: 8.1E-8
score: 32.2
IPR040309H/ACA ribonucleoprotein complex non-core subunit Naf1PANTHERPTHR31633FAMILY NOT NAMEDcoord: 30..383

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1614contigL-elsbetiae_contig1614:5932..11147 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1614.4216.1mRNA_L-elsbetiae_contig1614.4216.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1614 5932..11148 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1614.4216.1 ID=prot_L-elsbetiae_contig1614.4216.1|Name=mRNA_L-elsbetiae_contig1614.4216.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=385bp
KNPHLPRTGPLSFCPLGDVSDGEDTEFVGSAVPMTKNEEAEPILPLGEVS
IDGAKVKEIGVIISLVEADGTIVIEGDIPALEEGCVLSACVAELQADGTY
EATGPKEPLGRINEVFGPCASPHYTVRVEGAATQHQLVAKYQVALKKLLK
AEKERAAAKKEEADRVAAEVAAAEKEEALKDPLFALMAAADAEEKAAEAA
EAAAAAAAAAAVPVTGAQVREEAQRRKKEKKTPNPNNDENLQELRGLLKK
AEEGMGARKQHPFSKWKIGAKVYALEDAKCLAAKSIEEAKEAKGTDASNQ
HDEEAEEEDFSDDEQEKLAVVKAKQAKKRLDLAMQGVLPDEIERIMAEEK
RVLDAKHAKRDANNAAANAFRAERGGRGGRGRGRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038664Gar1/Naf1_Cbf5-bd_sf
IPR007504H/ACA_rnp_Gar1/Naf1
IPR040309Naf1