prot_L-elsbetiae_contig16108.4198.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig16108.4198.1
Unique Nameprot_L-elsbetiae_contig16108.4198.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length367
Homology
BLAST of mRNA_L-elsbetiae_contig16108.4198.1 vs. uniprot
Match: A0A6H5JF26_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF26_9PHAE)

HSP 1 Score: 303 bits (776), Expect = 5.720e-93
Identity = 190/354 (53.67%), Postives = 229/354 (64.69%), Query Frame = 0
Query:    1 GLVPNGISSTDVFIISRLGDTTSYFFSWFCKKYRIRIGA-RDLGRKEETQSRCPICLDACTKSTIELRCGHSFCRSCLTRSAANNMTSCALCRREQEINPELLRARFDEQRMLNLAQRLSI-PPPLRPRPSASAASMAAAEG---EREGQARLSSGGSPTLAREMLFGPWGDVGAMSADDLRRRWRFG-SVQTSTVGAVSASEIRSSWLEL----KQCMFMQGDGEYSRT--------DSMSCSGDTEIVVHEIGDRARRSPTASPGSPVAGGSSPDDLSVRWRNLTRIPPS---DSTKAEE------TSTDEVWGDIGSSDSACLRKRWLEANGAEAIGHLEVGELSEKLNHA 327
            G +  GI+  DVFI+SRL DTTSYFF+WFCKKYRI+IG  R LG KEE  +RCPICLD+CTKS IEL+CGHSFCRSCL RSAANNMTSCALCRREQEI+PE LRARFDEQRMLNLAQRL+I PPPLR RPSA++A+M+A+EG   E++ + R+    + T  RE+  G  GDVGAMS+DDLRRRW  G    ++T GA S+SE+RSSW E     +  M M  +GE   T        DS+SCSG  +I  H  G   RR    SP S  AG    D + +   +  RIP S   D   A         +T     D+G  D+ACLRKRW EA     +G + V EL+E L  A
Sbjct:   10 GTLRAGIAPADVFILSRLNDTTSYFFAWFCKKYRIQIGPPRGLGGKEEN-TRCPICLDSCTKS-IELQCGHSFCRSCLIRSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRLAILPPPLRSRPSATSAAMSASEGAYEEKDVRVRVKVVPTSTTGREVFVGLGGDVGAMSSDDLRRRWSCGVHTASATAGAASSSELRSSWRESHDRSRSLMPMHSEGELCGTSCQVLHGADSVSCSGHADIGSHFTGASPRR----SPDSQCAGRGRVDSMCLERHSSPRIPSSNFGDDASASALPARGGNTTPFETSDVGGLDAACLRKRWHEAMEFGDVGDMPVSELAESLTLA 357          
BLAST of mRNA_L-elsbetiae_contig16108.4198.1 vs. uniprot
Match: D7G6B8_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B8_ECTSI)

HSP 1 Score: 302 bits (774), Expect = 3.410e-92
Identity = 191/356 (53.65%), Postives = 236/356 (66.29%), Query Frame = 0
Query:    1 GLVPNGISSTDVFIISRLGDTTSYFFSWFCKKYRIRIGA-RDLGRKEETQSRCPICLDACTKSTIELRCGHSFCRSCLTRSAANNMTSCALCRREQEINPELLRARFDEQRMLNLAQRLSIPPP-LRPRPSASAASMAAAEG---EREGQARLSSGGSPTLAREMLFGPWGDVGAMSADDLRRRWRFGSVQT--STVGAVSASEIRSSWLEL----KQCMFMQGDGEYSRT--------DSMSCSGDTEIVVHEIGDRARRSPTASPGSPVAGGSSPDDLSVRWRNLTRIPPSD----------STKAEETSTDEVWGDIGSSDSACLRKRWLEANGAEAIGHLEVGELSEKLNHA 327
            G +  GI+  DVFI+SRL DTTSYFF+WFCKKYRI+IG  R LG KEE ++RCPICLD+CTKS IEL+CGHSFCRSCL +SAANNMTSCALCRREQEI+PE LRARFDEQRMLNLAQRL+IPPP +R RP+A+ A+M+A+EG   E+E + R+    + T  RE+LFG  GDVGAMS+DDLRRRW  G VQT  ST GA S+SE+RSSW E     +  M +  +G+   T        DS+SCSG  +I  H  G   RR    SP S  AGG   + + +   +  RIPPS+            + E T+  E   D+G  D+ACLRKR  EA     +G + V EL+ +L  A
Sbjct:   10 GALRTGIAPADVFILSRLNDTTSYFFTWFCKKYRIQIGPPRGLGGKEE-KTRCPICLDSCTKS-IELQCGHSFCRSCLIQSAANNMTSCALCRREQEIDPEQLRARFDEQRMLNLAQRLAIPPPPVRSRPTATGAAMSASEGACEEKEVRVRVGVVPTSTTQREVLFGLGGDVGAMSSDDLRRRWSCG-VQTASSTAGAASSSELRSSWRESHDRSRSPMPIHSEGDLFGTSCQVLHGADSLSCSGHADIGSHFTGASPRR----SPDSQCAGGGRVNSMCLERHSSLRIPPSNFGIDASASALPARGENTTPFET-SDVGGLDAACLRKRRHEAMEFGDVGDMPVSELAGRLTLA 357          
BLAST of mRNA_L-elsbetiae_contig16108.4198.1 vs. uniprot
Match: A0A836CQW4_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQW4_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.460e-28
Identity = 63/116 (54.31%), Postives = 82/116 (70.69%), Query Frame = 0
Query:    3 VPNGISSTDVFIISRLGDTTSYFFSWFCKKYRIRIGARDLGRKEETQSRCPICLDACTKSTIELRCGHSFCRSCLTRSAANNMTSCALCRREQEINPELLRARFDEQRMLNLAQRL 118
            +P G  + D FI++RL D TSYF +WFCK +R+R+            S CPICLD  T S I+L+CGH+FCRSCL  SAA N T+CALCRREQ ++P+ LR +FD++RM NLA+RL
Sbjct:  204 MPKGEGALDNFIVARLNDETSYFMTWFCKHFRLRLNT--------APSSCPICLDTVTNS-IQLQCGHAFCRSCLAASAACNFTTCALCRREQILHPDELRQQFDQRRMANLARRL 310          
BLAST of mRNA_L-elsbetiae_contig16108.4198.1 vs. uniprot
Match: A0A4D9CMH2_9STRA (RING-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CMH2_9STRA)

HSP 1 Score: 107 bits (268), Expect = 5.400e-22
Identity = 102/341 (29.91%), Postives = 150/341 (43.99%), Query Frame = 0
Query:   11 DVFIISRLGDTTSYFFSWFCKKYRIRIGARDLGRKEETQSRCPICLDACTKSTIELRCGHSFCRSCLTRSAANNMTSCALCRREQEINPELLRARFDEQRMLNLAQRLSIPPPLR--PRPSASAASMAAAEGEREGQARLSSGG----SPTL-AREMLFGPWGDVGAMSADDLRRRWR------FGSVQTSTVGAVSASEIRSSW--------------LELKQCMFMQGDGEYSRTDSMSCSGDTEIVVHEIGDRARRSPTASPGSPVAG-GSSPDDLSVRWRNLTRIPPSDSTKAEETSTDEVWGDIGSSDSACLRKRWLEANGAEA--IGHLEVGELS 321
            DVF +SRL D T+YFF W CK+Y + +       K E  S CPICL+  ++++I+L CGH+FCR CL  +A   M+SCALCR+   ++P++LR +F  QR  N++ RL      R   +PS  A    A  G      + S  G    SP+  A E+  G  G VG       + R R       G +    +   +A  +R ++              L+ +  M M G       +S    G   ++  E G  +    T   G    G G   D +  RW +L R       + +E       G +G  D A L   W EA G E+  +G  +V  L+
Sbjct:   69 DVFYLSRLNDPTTYFFQWICKRYGLTV-------KAEPHS-CPICLET-SENSIQLSCGHTFCRQCLKAAAEQKMSSCALCRKSHTLDPDVLRQQFQTQRFANMSWRLGNTRATRVFSKPSWEAL-FCAGSGGAGNAGKCSDVGDRASSPSCEAGEVPTGGGGSVGVTKGKGGKERGRGYVGPDIGGLPHRLLMRRAAKSVRRAFVSPDPDVGGSTRAELQRRWSMLMGGKA----AESKQWKGGVAVLTEEAGAESVAGLTRRWGRGREGQGGQADCMGSRWSDLMR-----QGQGKE-------GGVGGEDQAALTAWWREARGQESAEVGAAKVPTLA 383          
BLAST of mRNA_L-elsbetiae_contig16108.4198.1 vs. uniprot
Match: A0A7S3XVA3_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA3_HETAK)

HSP 1 Score: 107 bits (266), Expect = 1.120e-21
Identity = 111/379 (29.29%), Postives = 163/379 (43.01%), Query Frame = 0
Query:    9 STDVFIISRLGDTTSYFFSWFCKKYRIRIGARDLGRKEETQSRCPICLDACTKSTIELRCGHSFCRSCLTRSAANNMTSCALCRREQEINPELLRARFDEQRMLNLAQRLS----------------------IPP-------PL---RPRPSASAASMAAAEGEREGQARLSS----GGSPTLAREMLFGP----------WGDVGAMSADDLRRRW--------------RFGSVQTSTVGAVSASEIRSSWL----ELKQCMFMQGDGEYSRTDSMSCSGDTEIVVHEIGDRARRSPTAS----PGS--PVAGGSSPDDLSVRWRNLTRIPPSDSTKAEETSTDEVWGDIGSSDSACLRKRWLEANGAEAIGHLEV 317
            S DVF++SR+ D +SYF++WFCK++  ++ A    ++      CPICL++   S IEL+CGHSFCR CLT SA   ++ C LCR    +NPE+LR  F++QR+ NL +R                        + P       PL    PRPS+S+A       E++   +L S     G  + A+  L               DVGA+ A DL+  +              R G V+    GA S  ++ + W     +    M  Q    +  T + SC   T         R  ++PT      P S  P  G S   +LS RW NL     S++ ++ E       GD+       L +RW  A G+  +G   V
Sbjct:   38 SGDVFLVSRMNDESSYFYTWFCKRFEFKLKANKTYKEN-----CPICLESELHS-IELQCGHSFCRGCLTHSAEMKISCCPLCRANICLNPEVLRKNFEDQRIRNLMRRFQNVDRQKSFSSLSFLSTEEEKDHVDPVEQWRQMPLICPAPRPSSSSA-------EKKYLKKLPSPVIWSGKTSPAKPALRNASHISLDDPAFTRDVGALDASDLQELFSASLAFLDQMGAAKRKGEVRPPDAGACSVVDLSARWAAAHADPSVGMLPQLKLSHRLTTARSCRRST--------GRGSKTPTPPCAPLPDSWAPDVGASGTSELSTRWANL-----SNAARSPEA------GDLSIPQ---LHERWCAALGSPDVGSTAV 381          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16108.4198.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JF26_9PHAE5.720e-9353.67RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6B8_ECTSI3.410e-9253.65RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CQW4_9STRA1.460e-2854.31RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A4D9CMH2_9STRA5.400e-2229.91RING-type domain-containing protein n=2 Tax=Monodo... [more]
A0A7S3XVA3_HETAK1.120e-2129.29Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 52..91
e-value: 5.6E-7
score: 39.2
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 51..92
e-value: 5.0E-7
score: 30.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 52..92
score: 11.634
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 35..117
e-value: 2.9E-13
score: 51.3
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 68..77
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 47..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16108contigL-elsbetiae_contig16108:2590..3690 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16108.4198.1mRNA_L-elsbetiae_contig16108.4198.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig16108 2590..3690 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig16108.4198.1 ID=prot_L-elsbetiae_contig16108.4198.1|Name=mRNA_L-elsbetiae_contig16108.4198.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=367bp
GLVPNGISSTDVFIISRLGDTTSYFFSWFCKKYRIRIGARDLGRKEETQS
RCPICLDACTKSTIELRCGHSFCRSCLTRSAANNMTSCALCRREQEINPE
LLRARFDEQRMLNLAQRLSIPPPLRPRPSASAASMAAAEGEREGQARLSS
GGSPTLAREMLFGPWGDVGAMSADDLRRRWRFGSVQTSTVGAVSASEIRS
SWLELKQCMFMQGDGEYSRTDSMSCSGDTEIVVHEIGDRARRSPTASPGS
PVAGGSSPDDLSVRWRNLTRIPPSDSTKAEETSTDEVWGDIGSSDSACLR
KRWLEANGAEAIGHLEVGELSEKLNHAIGSQGSGGLGAACLRKSWHEAIG
TDTSVGHLNVRELSYRL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS