prot_L-elsbetiae_contig15944.4101.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig15944.4101.1
Unique Nameprot_L-elsbetiae_contig15944.4101.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length92
Homology
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BLAST of mRNA_L-elsbetiae_contig15944.4101.1 vs. uniprot
Match: A0A6H5JUH3_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUH3_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.500e-24
Identity = 61/92 (66.30%), Postives = 69/92 (75.00%), Query Frame = 0 
Query:    1 METDSLNTEFDELNELVRLLNSERPSDALDFRPP-TPRRCGDAGSXXXXXXXXXXXCSSGSGGREALSSERIKEVLRLRADFQREAIDALEL 91
            METDSL+TEF +LNELVRLLN ERP+DALD+RPP  PRR GD GS              G GG  ++SSER+KEVLRLRA+FQREAIDALEL
Sbjct:  767 METDSLSTEFGDLNELVRLLNFERPADALDYRPPPAPRRPGDNGSAGVNGGGGGRI---GDGGNASVSSERVKEVLRLRAEFQREAIDALEL 855
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BLAST of mRNA_L-elsbetiae_contig15944.4101.1 vs. uniprot
Match: D8LT95_ECTSI (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT95_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.020e-22
Identity = 60/92 (65.22%), Postives = 66/92 (71.74%), Query Frame = 0 
Query:    1 METDSLNTEFDELNELVRLLNSERPSDALDFRPP-TPRRCGDAGSXXXXXXXXXXXCSSGSGGREALSSERIKEVLRLRADFQREAIDALEL 91
            METDSLN EF +LNELVRLLN ERP+DALD+RPP  PRR  D GS              G G   ++SSER+KEVLRLRADFQREAIDALEL
Sbjct:  396 METDSLNMEFGDLNELVRLLNFERPADALDYRPPPAPRRPRDDGSAGVNGGGGGRI---GDGENASVSSERVKEVLRLRADFQREAIDALEL 484
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15944.4101.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUH3_9PHAE2.500e-2466.30Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
D8LT95_ECTSI1.020e-2265.22Conserved oligomeric Golgi complex subunit 4 n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 3..23
NoneNo IPR availableGENE3D1.20.58.1970coord: 1..91
e-value: 7.8E-8
score: 34.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15944contigL-elsbetiae_contig15944:2039..3118 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15944.4101.1mRNA_L-elsbetiae_contig15944.4101.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig15944 1369..3190 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig15944.4101.1 ID=prot_L-elsbetiae_contig15944.4101.1|Name=mRNA_L-elsbetiae_contig15944.4101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
METDSLNTEFDELNELVRLLNSERPSDALDFRPPTPRRCGDAGSAGGLGG
GGGGGCSSGSGGREALSSERIKEVLRLRADFQREAIDALEL*
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