prot_L-elsbetiae_contig15909.4084.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig15909.4084.1
Unique Nameprot_L-elsbetiae_contig15909.4084.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length101
Homology
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BLAST of mRNA_L-elsbetiae_contig15909.4084.1 vs. uniprot
Match: A0A836CIT0_9STRA (2',3'-cyclic-nucleotide 3'-phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIT0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.550e-8
Identity = 31/84 (36.90%), Postives = 50/84 (59.52%), Query Frame = 0 
Query:    4 YAGHSLWLVPGEPARSKIQTSIDRYSSEHGTVHFQAHVTLIAGVEPEGGAAEVLKKAESLALKLQPISARVEQTACMELYFKSV 87
            + GHSLWL+P +PA   +Q  +   S +  +  F+ H TL+AG+ PE    EV++K   LAL++      +++ A  +LYF+SV
Sbjct:    7 FVGHSLWLLPAQPALDALQEVVMEISVKRHSPCFKPHCTLLAGL-PESEE-EVIRKTRDLALRVAATPMTIDRVATKQLYFQSV 88
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15909.4084.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CIT0_9STRA3.550e-836.902',3'-cyclic-nucleotide 3'-phosphodiesterase n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.1140.10coord: 4..97
e-value: 1.1E-14
score: 56.3
IPR0123862',3'-cyclic-nucleotide 3'-phosphodiesterasePFAMPF07823CPDasecoord: 6..91
e-value: 1.4E-4
score: 21.7
IPR0123862',3'-cyclic-nucleotide 3'-phosphodiesterasePANTHERPTHR28141FAMILY NOT NAMEDcoord: 5..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15909contigL-elsbetiae_contig15909:3164..3466 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15909.4084.1mRNA_L-elsbetiae_contig15909.4084.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig15909 3164..3466 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig15909.4084.1 ID=prot_L-elsbetiae_contig15909.4084.1|Name=mRNA_L-elsbetiae_contig15909.4084.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
TSLYAGHSLWLVPGEPARSKIQTSIDRYSSEHGTVHFQAHVTLIAGVEPE
GGAAEVLKKAESLALKLQPISARVEQTACMELYFKSVSLHRQLISKILPP
H
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012386Cyclic-nucl_3Pdiesterase