prot_L-elsbetiae_contig1562.3935.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1562.3935.1
Unique Nameprot_L-elsbetiae_contig1562.3935.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length345
Homology
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BLAST of mRNA_L-elsbetiae_contig1562.3935.1 vs. uniprot
Match: D7G481_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G481_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 6.410e-67
Identity = 116/195 (59.49%), Postives = 139/195 (71.28%), Query Frame = 0 
Query:    1 MGLEVHEVAGLALAGVERVLADGRCLSTVTIRKCGLTYLPRLQSGSIEVLDLSDNELNSASGLEMLFRLKELNLAGNNLSTLADLRPLISLGAGCLTELNLDRNPVQNIPSRYRESAAVMLPSIQRLDGVATARPWRARKTVDNSTGGNQG-----CTTPPRIRDKPVDGYLSDGAAWVRRRAGQGS-SRCNSKS 189
            +GL +H + GL LAGVERVLAD RCL T+TIR C L  LPRLQSGSIEVLD+S+N + SA+GLE LFRLKELNLAGN + TL+ LRPL+ LG G L ELNLD NPVQN P RYRES   + PSIQ LDG+A ++ WR R     +T G +G     C+TPPR+R+   +GY SDGA W  RRAG    S C S++
Sbjct:   33 IGLGIHGIDGLTLAGVERVLADARCLCTLTIRHCRLARLPRLQSGSIEVLDISNNAIESAAGLETLFRLKELNLAGNRIRTLSGLRPLVPLGTGRLRELNLDSNPVQNTP-RYRESVLAVFPSIQLLDGIAKSQKWRMRTATKTNTVGEEGHDRRACSTPPRVRNAFSEGYFSDGATWNSRRAGLAEYSTCGSET 226
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BLAST of mRNA_L-elsbetiae_contig1562.3935.1 vs. uniprot
Match: A0A6H5KR55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR55_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 1.920e-65
Identity = 114/195 (58.46%), Postives = 141/195 (72.31%), Query Frame = 0 
Query:    1 MGLEVHEVAGLALAGVERVLADGRCLSTVTIRKCGLTYLPRLQSGSIEVLDLSDNELNSASGLEMLFRLKELNLAGNNLSTLADLRPLISLGAGCLTELNLDRNPVQNIPSRYRESAAVMLPSIQRLDGVATARPWRARKTVDNSTGGNQG-----CTTPPRIRDKPVDGYLSDGAAWVRRRAG-QGSSRCNSKS 189
            +GL +H   GLALAG+ERVLAD RCL T+TIR CGL  LPRLQSGSIEVLD S+N + SA+GLE LFRL+ELNLAGN + TL+DLRPL+ LG G L ELNL+ NPVQ+ P RYRES   + PSIQ LDG+A ++ WR R     +  G +G     C+TPPR+R+   +GY SDGA W  RRAG +  S+C S++
Sbjct:  117 IGLGIHGTDGLALAGIERVLADARCLCTLTIRDCGLARLPRLQSGSIEVLDFSNNAIESAAGLETLFRLQELNLAGNRIRTLSDLRPLLPLGTGRLRELNLENNPVQDSP-RYRESVLAVFPSIQLLDGIAKSQKWRMRTATKPNMAGEEGHNRRACSTPPRVRNAFAEGYFSDGATWNSRRAGLKEYSKCGSEA 310
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1562.3935.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G481_ECTSI6.410e-6759.49Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KR55_9PHAE1.920e-6558.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 4..140
e-value: 6.0E-19
score: 69.8
NoneNo IPR availablePANTHERPTHR18849LEUCINE RICH REPEAT PROTEINcoord: 46..132
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 26..132
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 95..116
score: 6.087
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 46..67
score: 7.258
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 68..89
score: 8.428

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1562contigL-elsbetiae_contig1562:8287..11185 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1562.3935.1mRNA_L-elsbetiae_contig1562.3935.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1562 8219..11269 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1562.3935.1 ID=prot_L-elsbetiae_contig1562.3935.1|Name=mRNA_L-elsbetiae_contig1562.3935.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=345bp
MGLEVHEVAGLALAGVERVLADGRCLSTVTIRKCGLTYLPRLQSGSIEVL
DLSDNELNSASGLEMLFRLKELNLAGNNLSTLADLRPLISLGAGCLTELN
LDRNPVQNIPSRYRESAAVMLPSIQRLDGVATARPWRARKTVDNSTGGNQ
GCTTPPRIRDKPVDGYLSDGAAWVRRRAGQGSSRCNSKSRAERQDVGDKH
GFVRGLAGLGLIWGGTPTPRTSRSVCSSPDGATILRGGSDSAALFGNSLD
GGFGELERSGGLVSATRSSKRCRPPSPARCRQMEADNARSRPRDTPKPRA
HWDTRFRHHHHQELVARTFAKKRAAELSRHTQTAIMDRLAQPVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt