prot_L-elsbetiae_contig15089.3645.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig15089.3645.1
Unique Nameprot_L-elsbetiae_contig15089.3645.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length375
Homology
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BLAST of mRNA_L-elsbetiae_contig15089.3645.1 vs. uniprot
Match: D8LJA3_ECTSI (Thioredoxin reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJA3_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 1.150e-43
Identity = 146/328 (44.51%), Postives = 165/328 (50.30%), Query Frame = 0 
Query:   56 AQGPARQRSGSTLVFRVEGSREDPDFVRACGVVKGLEHLYGKDRYLLHPVAEEDADSPEQRPQQQRS-RRRASWIPRWLCGSSRARSTASPSSTATENPRPRAVLCSIDSAPGTAAGGGGRAQTQTRAPQHRESSRRRARRLAAGG-------STADAGGTSVAIGGVEELVEFVRSSVLAGPRPFSFAFHEQSLRIKDAQRRKVGEVEVPVPPLDSPKPPASSDRAALRGXXXXXXXXXXXXXXXXXPASTAGPNAKREEEGCSFSSPNAGGVALSDAATTGGVGISSAERGAERERGRERRYEYDLVVIGGGSGGLACAKEAARMG 375
            A GPA  R G  LVFRVEG  +DP+F RACGVV+GLE LYGK+RYLL PV  ED  S   + Q++ S RRR  WIPRW  GS+  R  +     A E     AVLCSID AP          +TQ + P             AAGG       S A    T VAIGGV+EL+EFVR+SVLAGPRPFSFAFHEQSL I+ A RR                            XXXXXXXXXXXX     P                     A GV+ S+                         Y+YDLVVIGGGSGGLACAKEAAR+G
Sbjct:   49 ATGPAGARRGGALVFRVEGRPDDPEFARACGVVRGLEDLYGKERYLLQPVPVEDGGSSHDQEQRRASPRRRRPWIPRWFGGSAGRRKQSPQGGPAGETAPRSAVLCSIDRAPADD-------KTQAQGP-------------AAGGHLSAAEESPAAVANTRVAIGGVDELLEFVRTSVLAGPRPFSFAFHEQSLGIQAAHRRXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXLKHGAPGGAPXXXXXXXXXXXXXXXXXASGVSPSE-------------------------YDYDLVVIGGGSGGLACAKEAARLG 328
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BLAST of mRNA_L-elsbetiae_contig15089.3645.1 vs. uniprot
Match: A0A7R9DMY2_TIMPO (Hypothetical protein (Fragment) n=3 Tax=Timema TaxID=61471 RepID=A0A7R9DMY2_TIMPO)

HSP 1 Score: 50.8 bits (120), Expect = 8.940e-5
Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = 0 
Query:  351 YEYDLVVIGGGSGGLACAKEAARMG 375
            YEYDLVVIGGGSGGLACAKEA ++G
Sbjct:   12 YEYDLVVIGGGSGGLACAKEAVQLG 36
[Close]
BLAST of mRNA_L-elsbetiae_contig15089.3645.1 vs. uniprot
Match: A0A6A0A047_HAELA (Thioredoxin reductase TR1 n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0A047_HAELA)

HSP 1 Score: 51.6 bits (122), Expect = 9.110e-5
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0 
Query:  348 ERRYEYDLVVIGGGSGGLACAKEAARMG 375
            E  Y+YDL+VIGGGSGGLACAKEAA +G
Sbjct:   38 ETSYDYDLIVIGGGSGGLACAKEAAELG 65
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15089.3645.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LJA3_ECTSI1.150e-4344.51Thioredoxin reductase n=1 Tax=Ectocarpus siliculos... [more]
A0A7R9DMY2_TIMPO8.940e-588.00Hypothetical protein (Fragment) n=3 Tax=Timema Tax... [more]
A0A6A0A047_HAELA9.110e-578.57Thioredoxin reductase TR1 n=1 Tax=Haematococcus la... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036188FAD/NAD(P)-binding domain superfamilyGENE3D3.50.50.60coord: 346..375
e-value: 1.5E-7
score: 33.2
IPR036188FAD/NAD(P)-binding domain superfamilySUPERFAMILY51905FAD/NAD(P)-binding domaincoord: 351..375
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 32..49
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..49
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 50..375
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 20..31
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15089contigL-elsbetiae_contig15089:745..2679 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15089.3645.1mRNA_L-elsbetiae_contig15089.3645.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig15089 745..3406 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig15089.3645.1 ID=prot_L-elsbetiae_contig15089.3645.1|Name=mRNA_L-elsbetiae_contig15089.3645.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=375bp
MPPPRRAQRRPPLAVARFNLCGIAAAVAAAAGIVAVAGTGPISVDAATAE
TTTSSAQGPARQRSGSTLVFRVEGSREDPDFVRACGVVKGLEHLYGKDRY
LLHPVAEEDADSPEQRPQQQRSRRRASWIPRWLCGSSRARSTASPSSTAT
ENPRPRAVLCSIDSAPGTAAGGGGRAQTQTRAPQHRESSRRRARRLAAGG
STADAGGTSVAIGGVEELVEFVRSSVLAGPRPFSFAFHEQSLRIKDAQRR
KVGEVEVPVPPLDSPKPPASSDRAALRGSSSSSGSSSNNNGGATTPASTA
GPNAKREEEGCSFSSPNAGGVALSDAATTGGVGISSAERGAERERGRERR
YEYDLVVIGGGSGGLACAKEAARMG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036188FAD/NAD-bd_sf