prot_L-elsbetiae_contig14966.3563.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig14966.3563.1
Unique Name	prot_L-elsbetiae_contig14966.3563.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	234

Homology

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BLAST of mRNA_L-elsbetiae_contig14966.3563.1 vs. uniprot
Match: A0A6H5JSJ1_9PHAE (HMG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ1_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 8.180e-11
Identity = 67/222 (30.18%), Postives = 100/222 (45.05%), Query Frame = 0

Query:   18 ISIDPMLNWQKELAKAASMALKGDIGHYWDGA-------------WATLIHMAPDRMSVHQRYPDDEMER-------------LVRYSRERGIDHCSEPVQDAYLVLSEQAPADRKRFVQQSRPVVCD-TSSSEPEVRTSKKSXXXXXXXXXKKPLTGY----NKYVMDQTPFVKKELQNI-PGKGKDTNGKLAQEWKLLTSEAKASYEKEATKEDEARYVQ 207
            +SI+P  +WQ  L  AAS  +   +G    GA             WA+++H+AP R+SVHQR  D   +              LV  ++E    H S  VQDA+++ +   P+   RFV+ SR +    T SSEP     KK+              GY    N +V D+     ++ Q + PG   + N  L Q WK LT+E K  Y+  +   D+ RY++
Sbjct:  146 VSIEPRPDWQDILDAAASSLIPDGVGSNACGAVSGMEPLFKAVPLWASVVHVAPHRVSVHQRSADGATDGVAFQHSLVSGDGGLVSTAKEEMY-HSS--VQDAFVIFNTH-PSGSTRFVEHSRALTSGHTHSSEPRRTVPKKTSPPKRKRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDV-DKCRYLK 362

[Close]

BLAST of mRNA_L-elsbetiae_contig14966.3563.1 vs. uniprot
Match: D7G5V4_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V4_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 7.540e-10
Identity = 67/228 (29.39%), Postives = 103/228 (45.18%), Query Frame = 0

Query:   18 ISIDPMLNWQKELAKAASMALKGDIGHYWDGA-------------WATLIHMAPDRMSVHQRYPDDEMERLV-RYSRERG----IDHCSEP-----VQDAYLVLSEQAPADRKRFVQQSRPVVCD-TSSSEPEVRTSKKSXXXXXXXXXKKPLTGY----NKYVMDQTPFVKKELQNI-PGKGKDTNGKLAQEWKLLTSEAKASYEKEATKEDEARYVQAKGGVAPAG 216
            +SI+P  +WQ  L  AAS  +   +G    GA             WA+++H+AP R+SVHQR  D   + +  ++S   G    +    E      VQDA+++ +   P+   RFV+ S+ +    T SSE      KK+              GY    N +V D+     ++ Q + PG   + N  L Q WK LT+E K  Y+  +   D+ RY+  K G+ P G
Sbjct:   83 VSIEPRPDWQDILDAAASSLIPDGVGSNACGAVGGMEPLFNALPLWASVVHVAPHRVSVHQRSSDGVTDGVAFQHSLVNGDGGLVSTAKEEMYHNSVQDAFVIFNTH-PSGSTRFVEHSQALTSGHTRSSEARRMVPKKTSPPRRKRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDV-DKCRYL--KRGITPFG 306

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig14966.3563.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig14966.3563.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JSJ1_9PHAE	8.180e-11	30.18	HMG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta...	[more]
D7G5V4_ECTSI	7.540e-10	29.39	HMG box domain-containing protein n=1 Tax=Ectocarp...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 141..214 e-value: 3.1E-7 score: 40.0
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 142..202 e-value: 3.3E-7 score: 30.6
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 142..205 score: 9.617
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10		coord: 126..218 e-value: 3.7E-14 score: 54.7
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 129..202
None	No IPR available	PANTHER	PTHR13711	SWI/SNF-RELATED CHROMATIN BINDING PROTEIN	coord: 56..207
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..5
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 27..234
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 6..26
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..19 score: 0.654

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig14966	contig	L-elsbetiae_contig14966:1437..3435 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig14966.3563.1	mRNA_L-elsbetiae_contig14966.3563.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig14966 1437..3435 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig14966.3563.1 ID=prot_L-elsbetiae_contig14966.3563.1|Name=mRNA_L-elsbetiae_contig14966.3563.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=234bp
RSCLPWLFGFFLDLFFSISIDPMLNWQKELAKAASMALKGDIGHYWDGAW
ATLIHMAPDRMSVHQRYPDDEMERLVRYSRERGIDHCSEPVQDAYLVLSE
QAPADRKRFVQQSRPVVCDTSSSEPEVRTSKKSKKPKDPNAPKKPLTGYN
KYVMDQTPFVKKELQNIPGKGKDTNGKLAQEWKLLTSEAKASYEKEATKE
DEARYVQAKGGVAPAGSTCAKSLMSSGCSLRWNS

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009071	HMG_box_dom
IPR036910	HMG_box_dom_sf