prot_L-elsbetiae_contig14888.3523.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig14888.3523.1
Unique Nameprot_L-elsbetiae_contig14888.3523.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length139
Homology
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BLAST of mRNA_L-elsbetiae_contig14888.3523.1 vs. uniprot
Match: D8LPM1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 4.070e-56
Identity = 101/135 (74.81%), Postives = 119/135 (88.15%), Query Frame = 0 
Query:    5 FKEWKRKNAAGGGGATPATVAPAPTGAAPVAAAAADEKPKKIKRGQILGKSVKYKEKPGKTIEDEEREGLKEVVEAIKSAWQRAKKNQSAKSRGGEVDPVYHYMSLPSNRNAQLPMVWTLQEIDAAKFNPGNWFR 139
             ++ K +NA+ GGGATPATVAPAPTGAA +AAA A+EKPKKIKRGQI G+SVKY+ KPG+ I+D+ER+GLKEVVE IK AW+RAKK QSAKS+  +VDPVYHYMSLPSNRNA+LPMVWTLQEIDA +F PG+WFR
Sbjct: 1545 LRQLKTENASCGGGATPATVAPAPTGAAHLAAAGAEEKPKKIKRGQIPGQSVKYEPKPGRPIKDKERDGLKEVVEEIKGAWERAKKRQSAKSKEHKVDPVYHYMSLPSNRNAKLPMVWTLQEIDADEFQPGDWFR 1679
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BLAST of mRNA_L-elsbetiae_contig14888.3523.1 vs. uniprot
Match: A0A6H5JTS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS7_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 3.630e-5
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 0 
Query:  102 DPVYHYMSLPSNRNAQLPMVWTLQEIDAAKFNPGNWF 138
            D VY Y+  P++RN +L MVWTLQ+I+ A F PG WF
Sbjct:  397 DAVYPYIIRPAHRNGKLHMVWTLQDIETADFQPGEWF 433
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14888.3523.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPM1_ECTSI4.070e-5674.81PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JTS7_9PHAE3.630e-556.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 37..139
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..36
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 25..36

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14888contigL-elsbetiae_contig14888:695..1245 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14888.3523.1mRNA_L-elsbetiae_contig14888.3523.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig14888 695..1272 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig14888.3523.1 ID=prot_L-elsbetiae_contig14888.3523.1|Name=mRNA_L-elsbetiae_contig14888.3523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
MKFEFKEWKRKNAAGGGGATPATVAPAPTGAAPVAAAAADEKPKKIKRGQ
ILGKSVKYKEKPGKTIEDEEREGLKEVVEAIKSAWQRAKKNQSAKSRGGE
VDPVYHYMSLPSNRNAQLPMVWTLQEIDAAKFNPGNWFR
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