prot_L-elsbetiae_contig1477.3461.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1477.3461.1
Unique Nameprot_L-elsbetiae_contig1477.3461.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length1352
Homology
BLAST of mRNA_L-elsbetiae_contig1477.3461.1 vs. uniprot
Match: D7G868_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G868_ECTSI)

HSP 1 Score: 697 bits (1799), Expect = 4.920e-231
Identity = 447/833 (53.66%), Postives = 524/833 (62.91%), Query Frame = 0
Query:   85 IQRQARVWLARRAVDLKRVHVGLTSKVSEFADRLASSDDSRSVSAVFGQIDKDYRKYERIIGEMQAREDKMAATFVKKVLEKRDADIEGAWTRFVVAAIEHGAGPKHRSDARRAHPHPASLDQRTGASEVHGHEKILVLMERYGIPAYAQTLPSAYLRASLPMHLKLRGGGFVANNSPKSATWN-----------RQRIHNISPPPSSEQSPTQLQVDGAFASQVQ--------SSVSGTSGYPDTSVEDGFRSTVTASVAAGAXXXXXXXXXXXXXXXSPSRTSDQGLSGSIKRSPERQTTAGGDDLGFFGGIXXXXXXGVGVCVGGDGDDG--------RGGTWNNAAGGIVFPEQDAPALRR-AGRDNGSAAGWKSAWDTERESRRLTGDAGSRFPGSSARQDLPSGLNESVERLCAAAFLRGHVPEGLMPKGTTAEEAYQRYLQLPPSLAKIRHEQLCTEASRPVASVLRARGFTTLEQLLPPSKLDYLLGQAGAAADEILAAGFLARELKSKRDESS-GGSRGGDMFSPLPPFSRRGLLGGSRRTP-SSKEGPRDSRAXXXXXXXXXXXXXXXXXXXXXXXTK-----------------KKKGPLRISLEGLGFEGSAEETRKESA-WDPSRYTSRPDEWIRPPPSVRKQRWDDDTNAFLPINNYSFDGLYRRHHPLDPDGVDHDHSFGDEKNTASTGYDNDKGWFEVERQDGT-GQKKNLNRATGAFTSSPAAAS-LSGPPGCGSDSYARRMEAIMREEYGTFFDGMTQSARDMYQHMINDSSSWGSVDDSIGTLLCRAAFHVIEHPSPATRAELAAARERDLVAK 867
            I +QARVWLARRAV L++V VGLTS+VS+  D LASSDDSRS+S VFGQID+DYRKY+RII EMQARED+MA TFV+KVLE+R ADI GAWTRFV AA E+ AG + RSDARRAHP+PAS D+R  ASE+H  EK++ LMERY IPA+A+ LPSAYLRA+LPMHLKLR    V+    K  T N           R+R++ + P  S+E+   +    G F   VQ        SS+S     P T+         T + AAGA               SPSR S      S   S ER+T AGG D    GGI      G G    GD D G           T  +A  G      D+   +R  G    S +GW+S WD ERE R LTGDAGSRFPGS  RQD+PSGL E+VERLCAAAFLRGHVP GLMPKGTT EEAY+RYL+LPPSLAKIRHEQLCTEAS+PVAS LRARG+T LEQLLP SKL++L  QAG+ A E LAA  +A E+K KR     G   G D+FSPL PFSRR  L  SR  P S++  PR  R                        T                  KKKG LRIS++GL     A    + +  WDPSRYTSRP+EWIRPPPSV KQRWDD   AF+P+NNY+FDGLYRRHHPLD    D DH   D +    T    D  W    ++DG  GQ+++ +R  G + SSP AA  LSG    G   +A+R+E+IM+EEYGTFFDGMTQSA ++YQHMINDS SWGSVDDSIG LL RAAF ++EHPSPATRAELA ARERDLVAK
Sbjct:   37 IDKQARVWLARRAVHLQKVKVGLTSRVSKLTDMLASSDDSRSISTVFGQIDRDYRKYDRIIAEMQAREDEMAVTFVEKVLERRAADIGGAWTRFVGAATEYSAGRRKRSDARRAHPYPASGDKRAAASEIHD-EKLMRLMERYEIPAHAKALPSAYLRAALPMHLKLRSERLVSVE--KGHTQNVVSIDGTQRQKRRRVNTLLPS-SNEEVGARQDGGGVFMPAVQCNSLDEKMSSIS-----PATAA-------ATITTAAGAIN-------------SPSRFSSFEGKRSGAHSCERRTAAGGYD--GAGGIGCRGSDGGGAS--GDEDFGFVERHQTLTRQTSRHAGDGAENVGLDSAGSQRWEGGGGVSTSGWESVWDAEREKRGLTGDAGSRFPGSLVRQDMPSGLAETVERLCAAAFLRGHVPHGLMPKGTTPEEAYRRYLELPPSLAKIRHEQLCTEASQPVASALRARGYTVLEQLLPLSKLEHLFSQAGSGASETLAAVSIASEIKPKRGVGGCGNGSGDDLFSPLSPFSRR-CLARSRAAPISTQRSPRSRRREGLDDCVSDESVRKDGSRGSGRVTSRSXXXXXXXXXXXSGEAKKKGLLRISMQGLELPSRAAGMEQGNGRWDPSRYTSRPEEWIRPPPSVIKQRWDDSAKAFVPVNNYTFDGLYRRHHPLDH-CCDEDHRHVDNERDMVTRGGGDDNWCSEGKRDGAMGQEEHPSRPGGLYRSSPTAADPLSGA--AGGSCFAKRVESIMQEEYGTFFDGMTQSATELYQHMINDSGSWGSVDDSIGILLRRAAFFIVEHPSPATRAELAVARERDLVAK 832          
BLAST of mRNA_L-elsbetiae_contig1477.3461.1 vs. uniprot
Match: A0A836CBX2_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBX2_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.020e-16
Identity = 64/154 (41.56%), Postives = 86/154 (55.84%), Query Frame = 0
Query:  440 ERESRRLTGDAGSRFPGSSA----------------------RQDLPSGLNESVERLCAAAFLRGHVPEGLMPKGTTAEEAYQRYLQLPPSLAKIRHEQLCTEASRPVASVLRARGFTTLEQLLPPSKLDYLLGQAGAAADEILAAGFLARELK 571
            ER++R L   A +RF G+SA                       +D+P GL++   RL  AA LR  VP   MP GT+AE A++ YL LPPSLAKI+HEQ   +A+RP A+ L A GF  +  L+P SK+  ++ + G  A  ILAA  LA EL+
Sbjct: 1289 ERKARHLDHAASTRFAGASALTXXXXXXXXXXXXXXXXXXXXXRDIPGGLHDCTGRLLRAALLRSFVPS-TMPAGTSAEIAFRHYLALPPSLAKIKHEQDAAKAARPHAAALSAAGFHLIGHLMPISKMARVMQELGVPAAAILAAQDLAEELR 1441          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1477.3461.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G868_ECTSI4.920e-23153.66C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A836CBX2_9STRA1.020e-1641.56C2H2-type domain-containing protein n=1 Tax=Tribon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.5.190coord: 15..62
e-value: 8.2E-6
score: 27.5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..1351
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 1233..1263
score: 9.972
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 42..71
score: 8.59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1477contigL-elsbetiae_contig1477:16321..24962 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1477.3461.1mRNA_L-elsbetiae_contig1477.3461.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1477 16168..25010 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1477.3461.1 ID=prot_L-elsbetiae_contig1477.3461.1|Name=mRNA_L-elsbetiae_contig1477.3461.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1352bp
MTRKQTREMVVSLASTSLVPLQAHIRGVLLRSRVAKKWAILLDQQAVEIQ
RVFRGYRSRGAVQTVLKEKERAQSAQLQGWASLVIQRQARVWLARRAVDL
KRVHVGLTSKVSEFADRLASSDDSRSVSAVFGQIDKDYRKYERIIGEMQA
REDKMAATFVKKVLEKRDADIEGAWTRFVVAAIEHGAGPKHRSDARRAHP
HPASLDQRTGASEVHGHEKILVLMERYGIPAYAQTLPSAYLRASLPMHLK
LRGGGFVANNSPKSATWNRQRIHNISPPPSSEQSPTQLQVDGAFASQVQS
SVSGTSGYPDTSVEDGFRSTVTASVAAGAVGAAGSASVKSPSKPSPSRTS
DQGLSGSIKRSPERQTTAGGDDLGFFGGIGGVGGVGVGVCVGGDGDDGRG
GTWNNAAGGIVFPEQDAPALRRAGRDNGSAAGWKSAWDTERESRRLTGDA
GSRFPGSSARQDLPSGLNESVERLCAAAFLRGHVPEGLMPKGTTAEEAYQ
RYLQLPPSLAKIRHEQLCTEASRPVASVLRARGFTTLEQLLPPSKLDYLL
GQAGAAADEILAAGFLARELKSKRDESSGGSRGGDMFSPLPPFSRRGLLG
GSRRTPSSKEGPRDSRAASRSTTTSRYGGRPGISEEGSRDTKKKKGPLRI
SLEGLGFEGSAEETRKESAWDPSRYTSRPDEWIRPPPSVRKQRWDDDTNA
FLPINNYSFDGLYRRHHPLDPDGVDHDHSFGDEKNTASTGYDNDKGWFEV
ERQDGTGQKKNLNRATGAFTSSPAAASLSGPPGCGSDSYARRMEAIMREE
YGTFFDGMTQSARDMYQHMINDSSSWGSVDDSIGTLLCRAAFHVIEHPSP
ATRAELAAARERDLVAKGFGGKKNMLARPITLAGKFKPTGLEQQLAQTAL
AHERVPMGPEAFREFIRQLDTPSAGQRPQMSTRETPKTSSTGRRSNVDSR
RTLLERRFEAAAMLADPFKLRLEADGVFSVKVLARVPARAWGLPPCLVEE
IERMLGLLTARTCASDHLYAHYGQRRCQSSDTIEKQEGSKRAGFADEQRG
GSGGGGKQSCSNKRKGASKHRHVFEFDPRFQRSPIDPFGRPPRLERIQPC
LGPRQETEDVHGGRLLDDEGDFPPGLWDGPAGSEVSVISGVLDDEKGDTA
TKSAKPGPVMSPPLSLGGAALPNNSKGELPKHVPGELRQEPVFGRKPEEQ
THQAVTNKSAGKKGRAKKTISAKMPVQKSASRFTCRARPHCSAVFARASN
LRIHESSHAAAPEYHRLSRAPQLGRDPAPASFEGAGAPAEKFWLRTTLPP
SVRRELQQLREESMRRRRQSLLAGPGLSGTVATWAGVVSPGRTMFGQSDG
T*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR000048IQ_motif_EF-hand-BS