prot_L-elsbetiae_contig1470.3419.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1470.3419.1
Unique Nameprot_L-elsbetiae_contig1470.3419.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length150
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1470.3419.1 vs. uniprot
Match: A0A6H5KJD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD8_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 8.820e-44
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 0 
Query:   17 GVPLLEQPGGRSISGMALNPSDPNYLFVCGDSPFLDCYDARKVDSPAARYCPRSLRRSGAHITGVAVNWCGSEVLATYNPSGEVYRFDVKRNA 109
            G  LL QPGGRSISGMALNP+DPN LFVCGDSP+LD +DARKVD PAAR+CPRS R S AHITGVAVNWCGSEV+ATYNPSGEVY FDVK++A
Sbjct:  317 GSTLLRQPGGRSISGMALNPADPNVLFVCGDSPYLDMFDARKVDVPAARFCPRSRRGSRAHITGVAVNWCGSEVVATYNPSGEVYLFDVKKHA 409
[Close]
BLAST of mRNA_L-elsbetiae_contig1470.3419.1 vs. uniprot
Match: D7FTN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN6_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 1.120e-43
Identity = 77/101 (76.24%), Postives = 86/101 (85.15%), Query Frame = 0 
Query:   17 GVPLLEQPGGRSISGMALNPSDPNYLFVCGDSPFLDCYDARKVDSPAARYCPRSLRRSGAHITGVAVNWCGSEVLATYNPSGEVYRFDVKRNA---VGTAP 114
            G  LL QPGGRSISGMALNP+DPN LFVCGDSP+LD +DARK D PAAR+CPRS R S AHITGVAVNWCG+EV+ATYNPSGEVY FDVK++A    G+AP
Sbjct:  319 GATLLRQPGGRSISGMALNPADPNVLFVCGDSPYLDMFDARKADVPAARFCPRSRRGSRAHITGVAVNWCGTEVVATYNPSGEVYLFDVKKHASRGTGSAP 419
[Close]
BLAST of mRNA_L-elsbetiae_contig1470.3419.1 vs. uniprot
Match: UPI001C9D4518 (DDB1- and CUL4-associated factor 8-like n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9D4518)

HSP 1 Score: 52.4 bits (124), Expect = 5.060e-5
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 0 
Query:   35 NPSDPNYLFVCGDSPFLDCYDARKVDSPAARYCPRSLRRSGA-HITGVAVNWCGSEVLATYNPSGEVYRFD 104
            NP + N   + G S F+  YD RK   P     P++L  +   H+T VA N+ G+E+LA+YN + ++Y FD
Sbjct:  351 NPQNCNEFCIGGHSEFVRIYDRRKAKEPTLILRPKNLVETAQIHVTAVAYNYNGTEILASYN-NDDIYLFD 420
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1470.3419.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KJD8_9PHAE8.820e-4481.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTN6_ECTSI1.120e-4376.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001C9D45185.060e-538.03DDB1- and CUL4-associated factor 8-like n=1 Tax=Ve... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 13..140
e-value: 1.9E-5
score: 26.0
NoneNo IPR availablePANTHERPTHR15574WD REPEAT DOMAIN-CONTAINING FAMILYcoord: 29..131
NoneNo IPR availableSUPERFAMILY101898NHL repeatcoord: 23..113

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1470contigL-elsbetiae_contig1470:14438..16582 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1470.3419.1mRNA_L-elsbetiae_contig1470.3419.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1470 14438..16582 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1470.3419.1 ID=prot_L-elsbetiae_contig1470.3419.1|Name=mRNA_L-elsbetiae_contig1470.3419.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=150bp
SGRGGSGGGSGGGGNGGVPLLEQPGGRSISGMALNPSDPNYLFVCGDSPF
LDCYDARKVDSPAARYCPRSLRRSGAHITGVAVNWCGSEVLATYNPSGEV
YRFDVKRNAVGTAPAAEAAAASSTSPSSSSSGDGDDHDGGGCGDSPGWR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf