prot_L-elsbetiae_contig1451.3311.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig1451.3311.1
Unique Name	prot_L-elsbetiae_contig1451.3311.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	244

Homology

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BLAST of mRNA_L-elsbetiae_contig1451.3311.1 vs. uniprot
Match: A0A6H5LP07_9PHAE (SMP-LTD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LP07_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 8.540e-61
Identity = 153/266 (57.52%), Postives = 168/266 (63.16%), Query Frame = 0

Query:    2 PWSRGEAQSPPGASSWVSFVVVLNIVGSLFIWEFSAA----------SGITLPALSAVRGGVT---ESN------------GNTR--PSTVLIDADDVIDEMALASRQQPGTDSSEQVFKSTHVYRPSPAIRRKRTRS---KSRLGQEGDSLLRSLKTVTTRTTNGLARAVNVTGTAASVVAGGAFKLAGAAVLDAVDGVEYVSAKSPREVPGITDTWRLVAKGLRKTGETVYDFGVAAENVTAEATEAAEETIRTVVGSVIESAS 237
            PW R    +P        F +VL+ +    +    ++          SG+ LPA   VRGGVT   E N            GNT   P  VLIDA+D+ID MA AS Q+ GTD+ EQVFK THVYR     R KRT S   +SRL +EGDSLLRSLKTVTTRTTNGLARAVNVTGTAASVVAGGAFKLAGAAVLDAVD                  TWR VAKGLRKT ETVYDFGVAAENVTAEATE AEETIR+VVGSVI  AS
Sbjct:   11 PWPRARKMAP--------FALVLHTLALQLLCSLGSSXXXXXXXXXXSGLYLPA--GVRGGVTPAIEENHRSREEEQAGGQGNTTIPPRAVLIDANDIIDAMAQASGQRSGTDAHEQVFKQTHVYRSQVHHRSKRTMSNSGRSRLRREGDSLLRSLKTVTTRTTNGLARAVNVTGTAASVVAGGAFKLAGAAVLDAVD------------------TWRFVAKGLRKTAETVYDFGVAAENVTAEATEVAEETIRSVVGSVINPAS 248

[Close]

BLAST of mRNA_L-elsbetiae_contig1451.3311.1 vs. uniprot
Match: A0A836CIY7_9STRA (SMP-LTD domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIY7_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.960e-16
Identity = 56/118 (47.46%), Postives = 75/118 (63.56%), Query Frame = 0

Query:  113 KSRLGQEGDSLLRSLKTVTTRTTNGLARAVNVTGTAASVVAGGAFKLAGAAVLDAVDGVEYVSAKS----PREVPGITDTWRLVAKGLRKTGETVYDFGVAAENVTAEATEAAEETIR 226
            KS+L +EG  +   L  V+   ++G+ RAVNVTGT A+ VAG  FKLAGAAV+DA  G+EY  A++    P +VP +     LVAK L+K+G+ VY  G  AEN T EA   AE+ +R
Sbjct:   86 KSQLQREGKVVFGKLFKVSRHASHGVCRAVNVTGTTAATVAGSLFKLAGAAVMDASQGLEYAQARACAAAPMKVPVLDKGVTLVAKSLKKSGDFVYRLGELAENATTEAVGMAEDAVR 203

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig1451.3311.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig1451.3311.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5LP07_9PHAE	8.540e-61	57.52	SMP-LTD domain-containing protein n=2 Tax=Ectocarp...	[more]
A0A836CIY7_9STRA	2.960e-16	47.46	SMP-LTD domain-containing protein n=1 Tax=Tribonem...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..13
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 34..244
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 14..33
None	No IPR available	TMHMM	TMhelix		coord: 13..35

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig1451	contig	L-elsbetiae_contig1451:7979..11060 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig1451.3311.1	mRNA_L-elsbetiae_contig1451.3311.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig1451 7979..11060 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig1451.3311.1 ID=prot_L-elsbetiae_contig1451.3311.1|Name=mRNA_L-elsbetiae_contig1451.3311.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=244bp
MPWSRGEAQSPPGASSWVSFVVVLNIVGSLFIWEFSAASGITLPALSAVR
GGVTESNGNTRPSTVLIDADDVIDEMALASRQQPGTDSSEQVFKSTHVYR
PSPAIRRKRTRSKSRLGQEGDSLLRSLKTVTTRTTNGLARAVNVTGTAAS
VVAGGAFKLAGAAVLDAVDGVEYVSAKSPREVPGITDTWRLVAKGLRKTG
ETVYDFGVAAENVTAEATEAAEETIRTVVGSVIESASGNDPGAA