prot_L-elsbetiae_contig1442.3266.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1442.3266.1
Unique Nameprot_L-elsbetiae_contig1442.3266.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length380
Homology
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BLAST of mRNA_L-elsbetiae_contig1442.3266.1 vs. uniprot
Match: A0A6H5JPX1_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX1_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 9.290e-25
Identity = 58/75 (77.33%), Postives = 59/75 (78.67%), Query Frame = 0 
Query:  309 KNSFFAQLHAMERKKGTIGTTHATEGXXXXXXAEP----IQSSDWECLKCGKSNYKKASACDRCHALKRMTLWRD 379
            KNSFFAQL A ERKKGT+GT HAT     XXX       IQSSDWECLKCGKSNYK ASACDRCHALKRMTLWRD
Sbjct:  243 KNSFFAQLQASERKKGTVGTIHATGNHGGXXXXXXXXAGIQSSDWECLKCGKSNYKNASACDRCHALKRMTLWRD 317
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BLAST of mRNA_L-elsbetiae_contig1442.3266.1 vs. uniprot
Match: A0A5D6XEP5_9STRA (RanBP2-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XEP5_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.050e-6
Identity = 28/71 (39.44%), Postives = 42/71 (59.15%), Query Frame = 0 
Query:  310 NSFFAQLHAMERKKGTIGTTHATEGXXXXXXAEPIQSSDWECLK--CGKSNYKKASACDRCHALKRMTLWR 378
            +SFF ++ A E  K  +GT HA+ G         +    WEC+K  CG+ N K+A+AC +C A+KR++ WR
Sbjct:  149 HSFFERVRAQEAAKEAVGTVHAS-GVRALNPTARVALEQWECVKRGCGEKNPKRAAACSKCGAMKRLSEWR 218
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BLAST of mRNA_L-elsbetiae_contig1442.3266.1 vs. uniprot
Match: A0A1W0AAS6_9STRA (RanBP2-type domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AAS6_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.990e-5
Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 0 
Query:  312 FFAQLHAMERKKGTIGTTHATEGXXXXXXAEPIQSSD-WECLK--CGKSNYKKASACDRCHALKRMTLWR 378
            FF  L   E  K  +GT H T G       E +  +D WEC+K  CG SN KKA+AC +C A++R++ WR
Sbjct:   74 FFEMLKQQEAVKERVGTIH-TSGKK----TEVVTVTDNWECIKPGCGHSNMKKATACTKCGAMRRISAWR 138
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1442.3266.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JPX1_9PHAE9.290e-2577.33RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
A0A5D6XEP5_9STRA1.050e-639.44RanBP2-type domain-containing protein n=1 Tax=Pyth... [more]
A0A1W0AAS6_9STRA4.990e-542.86RanBP2-type domain-containing protein n=1 Tax=Thra... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 90..120
NoneNo IPR availableGENE3D4.10.1060.10coord: 341..375
e-value: 4.9E-6
score: 27.6
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 347..371
e-value: 4.0E-4
score: 29.7
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 349..368
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 345..374
score: 8.547
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 340..373

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1442contigL-elsbetiae_contig1442:20834..23172 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1442.3266.1mRNA_L-elsbetiae_contig1442.3266.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1442 20290..23268 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1442.3266.1 ID=prot_L-elsbetiae_contig1442.3266.1|Name=mRNA_L-elsbetiae_contig1442.3266.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=380bp
MTGRRRHDTPSPPSARRGRHDTPSPPPPGDRARQQRGRHQEQHKRRRSRS
PPSLSPRRAASDSRGGDGPRGGESGGENGGGDGEGESSRRRNKKRRKEEK
KAKKREKKRAKKKKKEKAGKKTARRSSNREQSRNSSDTSSSSSSSSKSGS
SSSSSRSRSRSRSRGRPGPHVSEEEQGSGVPREARAEPAPSEQPAEGQTR
RAVGLLPSSALVDQDAPTPPASPGGRGAQTKHANANAAAAEPPAAVAGGG
GAWTAGNGRAGGGGGREDGAVDEDAPTPPASPGAGGVPLQPPVAEVPVEA
AAAAAAAGKNSFFAQLHAMERKKGTIGTTHATEGGGGGGGAEPIQSSDWE
CLKCGKSNYKKASACDRCHALKRMTLWRD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR036443Znf_RanBP2_sf