prot_L-elsbetiae_contig144.3248.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig144.3248.1
Unique Name	prot_L-elsbetiae_contig144.3248.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	290

Homology

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BLAST of mRNA_L-elsbetiae_contig144.3248.1 vs. uniprot
Match: D8LFQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ8_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 6.340e-57
Identity = 125/294 (42.52%), Postives = 159/294 (54.08%), Query Frame = 0

Query:    1 MSVPRILVASLVSCLALTYT-GGSAQTLPADAAK---MASPKFLYSIDVLLDESTSPVILGIRHGQTVAQAAVGFCREQGLDGAMKSKLIPQLVKILEDGIDGALGPNTPVRDDALSPALSVEHADPDGGSESIYDLTLDDPVLTLGVSLGGEDERMLYYYAGQDVADVAMAFCTENLVSSASAEELTRCSDALSAHLTENISTANTVVTDKNRSEQXXXXXXXXQVKQGETQEPKVSYSATKPLVTVPLNINGRETALQIFQGSHAMELANEFCHREELGLEESSMDSCLSQV 290
            MS  R+LVASLVSCL +TY  GG++QT P+DAA    +AS  FL+S+DV+LDES   V LGIR GQTVA+AA+GFC EQGLDGAM+S L+PQL+K+LEDGI   +GP  PV D+A  P+   E    D   +   D  L DPVLTLG+S+ G +ER L+YY GQ +                                                                              L+TVPLN+NG ET LQIF+ S+A +LA++FC REE GLE S ++SC SQ+
Sbjct:    1 MSALRVLVASLVSCLTITYIIGGNSQTWPSDAAAATAIASSDFLFSVDVVLDESAVAVPLGIRDGQTVAEAALGFCHEQGLDGAMQSALMPQLMKVLEDGITEVVGPPFPVGDEASIPSSDAERVASDAQRDVPDDSKLADPVLTLGISIDGNEERPLFYYTGQGL------------------------------------------------------------------------------LMTVPLNVNGVETVLQIFRDSNAKDLASDFCRREEFGLEGSFLESCSSQM 216

[Close]

BLAST of mRNA_L-elsbetiae_contig144.3248.1 vs. uniprot
Match: A0A6H5KRC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRC8_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.460e-8
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 0

Query:  242 VTVPLNINGRETALQIFQGSHAMELANEFCHREELGLEESSMDSCLSQV 290
            +TVPLN+NG ET LQIF+GS+A ELA++FC R E  LE S ++SC SQ+
Sbjct:    1 MTVPLNVNGVETVLQIFRGSNAKELASDFCRRAEFRLEGSFLESCCSQM 49

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig144.3248.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig144.3248.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LFQ8_ECTSI	6.340e-57	42.52	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KRC8_9PHAE	3.460e-8	61.22	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 18..24
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..24
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..5
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 6..17
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 25..290
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..24 score: 0.739

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig144	contig	L-elsbetiae_contig144:50761..54365 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig144.3248.1	mRNA_L-elsbetiae_contig144.3248.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig144 50761..54365 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig144.3248.1 ID=prot_L-elsbetiae_contig144.3248.1|Name=mRNA_L-elsbetiae_contig144.3248.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=290bp
MSVPRILVASLVSCLALTYTGGSAQTLPADAAKMASPKFLYSIDVLLDES
TSPVILGIRHGQTVAQAAVGFCREQGLDGAMKSKLIPQLVKILEDGIDGA
LGPNTPVRDDALSPALSVEHADPDGGSESIYDLTLDDPVLTLGVSLGGED
ERMLYYYAGQDVADVAMAFCTENLVSSASAEELTRCSDALSAHLTENIST
ANTVVTDKNRSEQQQQQQDEQQVKQGETQEPKVSYSATKPLVTVPLNING
RETALQIFQGSHAMELANEFCHREELGLEESSMDSCLSQV