prot_L-elsbetiae_contig14265.3160.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig14265.3160.1
Unique Nameprot_L-elsbetiae_contig14265.3160.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length263
Homology
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BLAST of mRNA_L-elsbetiae_contig14265.3160.1 vs. uniprot
Match: A0A6H5JMF4_9PHAE (Vps8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF4_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 2.260e-39
Identity = 104/142 (73.24%), Postives = 111/142 (78.17%), Query Frame = 0 
Query:    5 TYADGNGGVSSVSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAASAADRANGFGGXXXXXXXXXXXXXXXDGGSKTKLVSAVAGGGDDLYGGADDSLHSLDVDRIIESMELEAGVDGDAA-EAGGRRSGSGIPPWRASA 145
            TY DGN G  S+SGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAAS ADRANGFG  XXXXXXXXX        + T+LVS+V G G DLYG ADD+L SLDVD+IIESMELEAG D D    AGG   GSG+ PWRASA
Sbjct:   82 TYGDGNNG--SLSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAASVADRANGFGAGXXXXXXXXX--------AMTRLVSSVGGAGSDLYGAADDNLQSLDVDKIIESMELEAGEDDDVTGRAGG--GGSGMTPWRASA 211
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BLAST of mRNA_L-elsbetiae_contig14265.3160.1 vs. uniprot
Match: D8LRX0_ECTSI (Vps8 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRX0_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 6.430e-34
Identity = 107/169 (63.31%), Postives = 115/169 (68.05%), Query Frame = 0 
Query:    6 YADGNGGVSSVSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAASAADRANGFGGXXXXXXXXXXXXXXXDGGSKTKLVSAVAGGGDDLYGGADDSLHSLDVDRIIESMELEAGVDGDAA-EAGGRRSGSGIPPWRASAAGAAXXXXXXXXXXXGSSRRRSFTTDGT 173
            Y DGN G  S+SGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAAS          XXXXXXXXXXXX      + T+LVS+V G G DLYG ADD+L SLDVD+IIESMELEAG D D    AGG   GSG+ PWRAS AG              S RRRS T DG+
Sbjct:   91 YGDGNNG--SLSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIAASXXXXXXXXXXXXXXXXXXXXXX------AMTRLVSSVGGAGSDLYGAADDNLQSLDVDKIIESMELEAGEDDDVTGRAGG--GGSGMTPWRASVAGGGVSTTATAW----SGRRRSSTADGS 245
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14265.3160.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMF4_9PHAE2.260e-3973.24Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LRX0_ECTSI6.430e-3463.31Vps8 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 28..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14265contigL-elsbetiae_contig14265:2728..3516 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14265.3160.1mRNA_L-elsbetiae_contig14265.3160.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig14265 2728..3518 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig14265.3160.1 ID=prot_L-elsbetiae_contig14265.3160.1|Name=mRNA_L-elsbetiae_contig14265.3160.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=263bp
SSGGTYADGNGGVSSVSGAPPRTAFLSRDEVSEDSRLLQQILRESEEEIA
ASAADRANGFGGGFGNGGNGNGNGNGNDGGSKTKLVSAVAGGGDDLYGGA
DDSLHSLDVDRIIESMELEAGVDGDAAEAGGRRSGSGIPPWRASAAGAAG
AGADTAGAATGSSRRRSFTTDGTGGGDGGSGGEGAAEAGGRDRGASASGA
SAAASPASTPNDGYGLGLPRVSDIAAVRKQNGEPPSRARRKPSQGTGRPG
ATGGSKLSTAGAG
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