prot_L-elsbetiae_contig14183.3109.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig14183.3109.1
Unique Nameprot_L-elsbetiae_contig14183.3109.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length539
Homology
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BLAST of mRNA_L-elsbetiae_contig14183.3109.1 vs. uniprot
Match: A0A6H5KKU8_9PHAE (TFIIS N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKU8_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 6.210e-55
Identity = 309/488 (63.32%), Postives = 335/488 (68.65%), Query Frame = 0 
Query:   89 NNAKKARHGGGMAPGQAKERALAVIRNFVASLPPMEFGRDEGWIASKEEARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPEPIWKQLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVGVNREGQIQTGRKLTQRLGRATVEGKFNKDEVLEALRKLGELDPSRELLQQSGCGKAVASARKYFFGGQVKHNDKDVATAASNLRSRWMDALAGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRVSSAKKPVSQESPRARSPKVDTGGGVVVGAGIGREPKKENGGNGSPRGXXXXXXXXXXXXXXXXXXEKEQPAAXXXXXXXXXXXXXXXXXXXXXXXXXXPV---ALKMPAAVAMDE----------------------------------GRDVNKEYLRRLRTAVFSMEGSEYQRLRDKVMSEMVL 539
            ++ KK R GG M PG+AK RALA +R FVA LPP E+GRDEGWI SKEEA           XXXXXXXXXXXXXXX       XXXXXXXXXXXXXXXXXXXXXXXXXXXXX         SS EPIWKQ RR XXXXXXXXXXXXXXXXXXXXXXXXXXXX     A  G NRE +IQ GRKLTQRL +A VEGKFNK+EVLE L+KLGEL+PSRELLQQSGCGKAVASARKYF GGQVKHNDK+VATAAS+LR+RWM+ALAG  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +  V +E+PR+RSPK +TGG    G                   XXXXXXXXXXXXXXXXXX       XXX         XXXXXXXXXXXXXX     + KM  AVA DE                                  G +++KEYLRRLRTAVFSMEGS+ Q+LRDKVMS  V+
Sbjct:  509 SSGKKRRQGGSMEPGRAKARALAFVREFVAGLPPTEYGRDEGWIPSKEEAAREASARAGESXXXXXXXXXXXXXXXNKRDRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQMK-----SSSEPIWKQHRRMXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPPGAGAGGNRESEIQMGRKLTQRLAKAGVEGKFNKEEVLEILQKLGELEPSRELLQQSGCGKAVASARKYFSGGQVKHNDKEVATAASSLRTRWMNALAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR--VGEETPRSRSPKPETGGVAREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKKETTKEVXXXXXXXXXXXXXXXXXXXSAKMSTAVAKDEPRRRAMGMLMSVLGTTAAALERCTEIEEELHQSQGGEISKEYLRRLRTAVFSMEGSDSQKLRDKVMSGYVV 989
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14183.3109.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKU8_9PHAE6.210e-5563.32TFIIS N-terminal domain-containing protein n=2 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017923Transcription factor IIS, N-terminalPFAMPF08711Med26coord: 293..349
e-value: 1.0E-6
score: 28.7
IPR017923Transcription factor IIS, N-terminalPROSITEPS51319TFIIS_Ncoord: 271..353
score: 11.633
IPR035441TFIIS/LEDGF domain superfamilyGENE3D1.20.930.10coord: 263..357
e-value: 2.8E-9
score: 38.5
IPR035441TFIIS/LEDGF domain superfamilySUPERFAMILY47676Conserved domain common to transcription factors TFIIS, elongin A, CRSP70coord: 284..362

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14183contigL-elsbetiae_contig14183:285..4613 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14183.3109.1mRNA_L-elsbetiae_contig14183.3109.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig14183 285..4613 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig14183.3109.1 ID=prot_L-elsbetiae_contig14183.3109.1|Name=mRNA_L-elsbetiae_contig14183.3109.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=539bp
KDDKLSDEDFVAAKGSGSGSRKSKGRGRPRKSGSGEAGGEAGGGGGGRGK
KKKAKRPRPTSPSASDGGGSDDDGDGGGGSGNGSGSGSNNAKKARHGGGM
APGQAKERALAVIRNFVASLPPMEFGRDEGWIASKEEAREAREAREAAAS
KAGGGEGGGAAGGGSGSGGGGGGGGGEKGEKKPKKMKPSSREEKQREEKE
RKERLSQMKSSPEPIWKQLRRIKEEKEKEKGGGGGGGGASGAPESAASKS
PSAPSAVVGVNREGQIQTGRKLTQRLGRATVEGKFNKDEVLEALRKLGEL
DPSRELLQQSGCGKAVASARKYFFGGQVKHNDKDVATAASNLRSRWMDAL
AGGSGSGGGGGGGSGGKSSSAPATPRASSSTPAPASASRVSSAKKPVSQE
SPRARSPKVDTGGGVVVGAGIGREPKKENGGNGSPRGSGGGEGGRYGGGS
GGGGREKEQPAAEAVAVKREAKEKTAPAAAAAAASASAPVALKMPAAVAM
DEGRDVNKEYLRRLRTAVFSMEGSEYQRLRDKVMSEMVL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017923TFIIS_N
IPR035441TFIIS/LEDGF_dom_sf