prot_L-elsbetiae_contig14101.3062.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig14101.3062.1
Unique Name	prot_L-elsbetiae_contig14101.3062.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	220

Homology

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BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: D7FYA2_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA2_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 8.020e-80
Identity = 141/223 (63.23%), Postives = 153/223 (68.61%), Query Frame = 0

Query:    1 MAPRQVFPYSDEGAGGLRPSPRQLLVDAVRG--KLADDTLSTSDDNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLHDALNDXXXXXGEG-SVDLGSTWASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKENM 220
            MAPRQVFPY +   G LR +PRQLL ++ +   K  +                                             DL DALND XXXX    S+DLG+ WASR+FVPK GVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFAT +QANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGL+E+WSC YI QLLKE M
Sbjct:    1 MAPRQVFPYHE--CGVLR-TPRQLLAESQQQQRKELESXXXEQHRQGEQWADIDKPSPFTPTFDESGSSGGEAACVQQPHCSDLRDALNDDXXXXXXXESLDLGAVWASREFVPKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKM 220

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BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: A0A6H5K9D0_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D0_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 1.640e-70
Identity = 138/222 (62.16%), Postives = 149/222 (67.12%), Query Frame = 0

Query:    1 MAPRQVFPYSDEGAGGLRPSPRQLLVDA--VRGKLADDTLSTSDDNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLHDALNDXXXXXGEGSVDLGSTWASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKENM 220
            MAPRQVFPY +   G LR +PRQLL ++                                                      DL DAL D XXXX E S+DLG+ WASR+FVPK GVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFAT +QAN AI+TMHRFEFKHGRFLGVLPSDENRTLFVGGL+E+WSC YI QLLKE M
Sbjct:    1 MAPRQVFPYDE--CGVLR-TPRQLLAESQXXXXXXXXXXXXXXXHQREPWLDLDNPSPFTPTFDESGSSGGEAGCVQQPHSSDLRDALKDDXXXXXE-SLDLGTAWASREFVPKPGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATSEQANLAIETMHRFEFKHGRFLGVLPSDENRTLFVGGLQEEWSCAYICQLLKEKM 218

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BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: A0A836CJD8_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD8_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.470e-36
Identity = 69/125 (55.20%), Postives = 86/125 (68.80%), Query Frame = 0

Query:   95 EGSVDLGSTWASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKEN 219
            EGS  L          P  GVEIFVGGLTR++  +ML DWF H GE+TEVR+ARDKRRRRCRGYG+VRF   +QAN AI+ M  ++FK G +LG+LPSDENRTL+V G+ + WS + +      N
Sbjct:  214 EGSDHLSFCCGETPGSPPPGVEIFVGGLTRASSAEMLYDWFCHLGEITEVRVARDKRRRRCRGYGFVRFRNSEQANLAIEAMQGYQFKKGCYLGMLPSDENRTLYVSGMCQSWSQDQVHAYFSAN 338

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BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: A0A836CKV5_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKV5_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.550e-30
Identity = 66/125 (52.80%), Postives = 82/125 (65.60%), Query Frame = 0

Query:  111 PKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLG-------------------VLPSDENRTLFVGGLREDWSCEYISQLL 216
            P  GVEIFVGGLTRS+ R++L D F H G++TEVRIARDKRRRRCRGYG+VRF T +QAN A+++M  F+FK G +L                    VLPSDENRTL+  G+ ED S + +   L
Sbjct:  151 PCPGVEIFVGGLTRSSTRELLYDCFSHIGDITEVRIARDKRRRRCRGYGFVRFRTSEQANMAVESMQAFQFKRGCYLSALLNAKKIAXXXXXXXXXXVLPSDENRTLYACGIEEDVSPDAVCWFL 275

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BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: A0A803NB38_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803NB38_CHEQI)

HSP 1 Score: 89.4 bits (220), Expect = 5.190e-17
Identity = 49/125 (39.20%), Postives = 75/125 (60.00%), Query Frame = 0

Query:   94 GEGSVDLGSTWASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKE 218
            G G+ +L +  A+++   K+ +EIFVGGL R    D ++  F+  GEV EVR+ +D    + RG+ +VRFAT DQA RA+  M     + G+  G  P+++N TLF+G +   W+ E I Q LK+
Sbjct:  234 GSGAQELAA--AAKERKVKKELEIFVGGLDREVIEDDVKKTFEKVGEVVEVRLLKDTLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKD 355

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BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: A0A7C9F016_OPUST (Uncharacterized protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9F016_OPUST)

HSP 1 Score: 88.6 bits (218), Expect = 1.070e-16
Identity = 48/114 (42.11%), Postives = 68/114 (59.65%), Query Frame = 0

Query:  105 ASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKE 218
            A+++   K+  EIFVGGL R    D L+  F+  GEV EVR+ +D    + RG+ +VRFAT DQA RA+  M     + G+  G  P+++N TLFVG +   W+ E I Q LK+
Sbjct:  324 AAKERRVKKEHEIFVGGLDREVVEDDLKKAFEKVGEVVEVRLLKDPLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFVGNICNTWTKEAIKQKLKD 436

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BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: A0A803NC05_CHEQI (Uncharacterized protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803NC05_CHEQI)

HSP 1 Score: 88.2 bits (217), Expect = 1.550e-16
Identity = 46/114 (40.35%), Postives = 69/114 (60.53%), Query Frame = 0

Query:  105 ASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKE 218
            A+++   K+ +EIFVGGL R    D ++  F+  GEV EVR+ +D    + RG+ +VRFAT DQA RA+  M     + G+  G  P+++N TLF+G +   W+ E I Q LK+
Sbjct:  540 AAKERKVKKELEIFVGGLDREVIEDDVKKTFEKVGEVVEVRLLKDTLTNKNRGFAFVRFATKDQAKRALSEMKNPVIR-GKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKD 652

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BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: UPI00053FBE2C (nucleolin-like isoform X1 n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FBE2C)

HSP 1 Score: 87.8 bits (216), Expect = 2.010e-16
Identity = 47/114 (41.23%), Postives = 68/114 (59.65%), Query Frame = 0

Query:  105 ASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKE 218
            A+++   K+ +EIFVGGL R    D ++  F+  GEV EVR+ +D    + RG+ +VRFAT DQA RA+  M       G+  G  P+++N TLF+G +   W+ E I Q LKE
Sbjct:  334 AAKERKVKKELEIFVGGLDREVVEDDVKTAFEKVGEVVEVRLLKDPSTNKNRGFAFVRFATKDQAKRALSEMKN-PVICGKRCGTAPNEDNDTLFLGNVCNTWTKEAIKQKLKE 446

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BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: UPI00087821D9 (nucleolin-like isoform X8 n=4 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI00087821D9)

HSP 1 Score: 87.0 bits (214), Expect = 3.870e-16
Identity = 43/113 (38.05%), Postives = 71/113 (62.83%), Query Frame = 0

Query:  106 SRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKE 218
            +++ + ++ +E+FVGGL R    + L+  FQH GEV +VR+ R+    + +GY +V+FAT +QA+RA+  M R     G+  G  PS++N TLF+G +   W+ E + Q LK+
Sbjct:  507 AKERMKRKELEVFVGGLDRDAVEEDLKRVFQHVGEVIDVRMHREVSTNKNKGYAFVKFATKEQASRALSEM-RNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAVRQKLKD 618

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BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Match: A0A314LEQ0_NICAT (Nucleolin 2 n=18 Tax=Nicotiana TaxID=4085 RepID=A0A314LEQ0_NICAT)

HSP 1 Score: 87.0 bits (214), Expect = 3.960e-16
Identity = 43/113 (38.05%), Postives = 71/113 (62.83%), Query Frame = 0

Query:  106 SRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDKRRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFVGGLREDWSCEYISQLLKE 218
            +++ + ++ +E+FVGGL R    + L+  FQH GEV +VR+ R+    + +GY +V+FAT +QA+RA+  M R     G+  G  PS++N TLF+G +   W+ E + Q LK+
Sbjct:  662 AKERMKRKELEVFVGGLDRDAVEEDLKRVFQHVGEVIDVRMHREVSTNKNKGYAFVKFATKEQASRALSEM-RNPVIRGKRCGTAPSEDNDTLFLGNICNTWTKEAVRQKLKD 773

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig14101.3062.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FYA2_ECTSI	8.020e-80	63.23	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5K9D0_9PHAE	1.640e-70	62.16	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A836CJD8_9STRA	2.470e-36	55.20	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A836CKV5_9STRA	1.550e-30	52.80	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A803NB38_CHEQI	5.190e-17	39.20	Uncharacterized protein n=1 Tax=Chenopodium quinoa...	[more]
A0A7C9F016_OPUST	1.070e-16	42.11	Uncharacterized protein (Fragment) n=1 Tax=Opuntia...	[more]
A0A803NC05_CHEQI	1.550e-16	40.35	Uncharacterized protein n=2 Tax=Chenopodium quinoa...	[more]
UPI00053FBE2C	2.010e-16	41.23	nucleolin-like isoform X1 n=2 Tax=Beta vulgaris su...	[more]
UPI00087821D9	3.870e-16	38.05	nucleolin-like isoform X8 n=4 Tax=Nicotiana toment...	[more]
A0A314LEQ0_NICAT	3.960e-16	38.05	Nucleolin 2 n=18 Tax=Nicotiana TaxID=4085 RepID=A0...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 116..190 e-value: 3.1E-19 score: 79.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 117..182 e-value: 1.3E-17 score: 63.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 115..194 score: 16.193
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 61..193 e-value: 1.5E-23 score: 85.2
None	No IPR available	PANTHER	PTHR21245:SF9		coord: 71..218
None	No IPR available	PANTHER	PTHR21245	FAMILY NOT NAMED	coord: 71..218
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 116..216

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig14101	contig	L-elsbetiae_contig14101:3468..4127 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig14101.3062.1	mRNA_L-elsbetiae_contig14101.3062.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig14101 3468..4127 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig14101.3062.1 ID=prot_L-elsbetiae_contig14101.3062.1|Name=mRNA_L-elsbetiae_contig14101.3062.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=220bp
MAPRQVFPYSDEGAGGLRPSPRQLLVDAVRGKLADDTLSTSDDNAPPFIA
PPPLSSGGGGCHETCPQQQQQQQQQQEDSGDLHDALNDDDDDDGEGSVDL
GSTWASRDFVPKRGVEIFVGGLTRSTRRDMLRDWFQHAGEVTEVRIARDK
RRRRCRGYGYVRFATGDQANRAIDTMHRFEFKHGRFLGVLPSDENRTLFV
GGLREDWSCEYISQLLKENM

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf