prot_L-elsbetiae_contig1408.3047.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1408.3047.1
Unique Nameprot_L-elsbetiae_contig1408.3047.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length112
Homology
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BLAST of mRNA_L-elsbetiae_contig1408.3047.1 vs. uniprot
Match: D8LCB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB1_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 8.570e-28
Identity = 50/108 (46.30%), Postives = 73/108 (67.59%), Query Frame = 0 
Query:    1 MWGGEGTPTHDEEGRCLCVCADDSWSETNILGRASCVPVKAHLIYGWAGLVLSTAALCHAVYHLHRQLQFHRQQISASTSHIEQSRWKLHAAAVTFASFNMCYFFMVL 108
            +WGG G  T   +G C C C +++WSE NI+G  SCVP KAH+++G  G++++T +LCH+ Y L+RQ++ HRQ I+AS S +E+ R  LH   +  A   +CYF MVL
Sbjct:   10 LWGGTGISTVGADGACRCACGNETWSEYNIVGLPSCVPSKAHVVFGTVGVLMATTSLCHSAYQLYRQVKHHRQVITASISSVEKCRRWLHIVVIIHAVIGLCYFGMVL 117
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BLAST of mRNA_L-elsbetiae_contig1408.3047.1 vs. uniprot
Match: A0A6H5KM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM92_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.810e-26
Identity = 51/108 (47.22%), Postives = 71/108 (65.74%), Query Frame = 0 
Query:    1 MWGGEGTPTHDEEGRCLCVCADDSWSETNILGRASCVPVKAHLIYGWAGLVLSTAALCHAVYHLHRQLQFHRQQISASTSHIEQSRWKLHAAAVTFASFNMCYFFMVL 108
            +WGG G  T   +G C C C D++WSE NILG  SCVP KAH ++G  G+ ++  +L HA Y L+RQ+++HRQ ++ASTS +E+ R  LH   +  A   +CYF MVL
Sbjct:   10 LWGGTGISTVGADGGCRCACGDETWSEYNILGLPSCVPSKAHAVFGAVGVFVTMTSLGHAAYQLYRQVKYHRQFMAASTSSVEKCRRWLHIVVIIHAVIGLCYFGMVL 117
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1408.3047.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCB1_ECTSI8.570e-2846.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM92_9PHAE1.810e-2647.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 112..112
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 65..88
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 44..64
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 89..111
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..43
NoneNo IPR availableTMHMMTMhelixcoord: 89..111
NoneNo IPR availableTMHMMTMhelixcoord: 43..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1408contigL-elsbetiae_contig1408:21941..23634 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1408.3047.1mRNA_L-elsbetiae_contig1408.3047.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1408 21941..23634 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1408.3047.1 ID=prot_L-elsbetiae_contig1408.3047.1|Name=mRNA_L-elsbetiae_contig1408.3047.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MWGGEGTPTHDEEGRCLCVCADDSWSETNILGRASCVPVKAHLIYGWAGL
VLSTAALCHAVYHLHRQLQFHRQQISASTSHIEQSRWKLHAAAVTFASFN
MCYFFMVLAGFL
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