prot_L-elsbetiae_contig1389.2926.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1389.2926.1
Unique Nameprot_L-elsbetiae_contig1389.2926.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length306
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1389.2926.1 vs. uniprot
Match: D7G994_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G994_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 2.900e-49
Identity = 110/193 (56.99%), Postives = 122/193 (63.21%), Query Frame = 0 
Query:   99 GAGLAEDPAAPFVVPGDRSACLRRVSNTLAGCHGGTNVLCARACLGLPGVVASGGADMSLQVSRLVDESRDNTGXXXXXSS-------TELHRLKLAAPVLSMDFCPVSAPIFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDAVEDKDSDAGEEGKK-NGVALLASMKNHAKYVVVCRWA 283
            G G+A+DPAAPFVVPGDR+AC+R+VS+TL GCHGGTNVLCARAC GLPG+VASGGADMSLQVSRL     DN G      S       TELHRLKLAAPVLSMDFCP S P  G XXXXXX                               S D     D+      ++ NGVALLASMKNHAKYVVVCR++
Sbjct:   61 GVGVADDPAAPFVVPGDRTACVRQVSDTLVGCHGGTNVLCARACPGLPGIVASGGADMSLQVSRLAQGLGDNEGNADSGGSASSSSRSTELHRLKLAAPVLSMDFCPSSVPFRGGXXXXXXGLLLAGGMDGSSHLV----------------SIDGSHGGDAXXXXXXEETNGVALLASMKNHAKYVVVCRYS 237
[Close]
BLAST of mRNA_L-elsbetiae_contig1389.2926.1 vs. uniprot
Match: A0A6H5JKD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKD0_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.200e-18
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 0 
Query:  262 NGVALLASMKNHAKYVVVCRWAPDGSAFVTASHDKVVTLYTLRAG 306
            NGVALLASMKNHAKYVVVCRWAPDG AFVTASHDKVVTLYTLR G
Sbjct:   31 NGVALLASMKNHAKYVVVCRWAPDGRAFVTASHDKVVTLYTLRGG 75
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1389.2926.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G994_ECTSI2.900e-4956.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKD0_9PHAE1.200e-1895.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 52..72
NoneNo IPR availableCOILSCoilCoilcoord: 14..41
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 120..162
e-value: 170.0
score: 2.9
coord: 263..302
e-value: 0.0032
score: 26.7
coord: 178..227
e-value: 98.0
score: 4.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 270..306
score: 11.043
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 270..306
score: 10.575
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 147..304

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1389contigL-elsbetiae_contig1389:15680..21713 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1389.2926.1mRNA_L-elsbetiae_contig1389.2926.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1389 15666..21713 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1389.2926.1 ID=prot_L-elsbetiae_contig1389.2926.1|Name=mRNA_L-elsbetiae_contig1389.2926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=306bp
MEDEGSAGGDRGGSDGAFADLERLRARVVELEEENDLLAVAATREPELLA
DIKRLTTRVAELEGENTALSEANSRLGQGTEGENSGSGGNNTSNSSGGGA
GLAEDPAAPFVVPGDRSACLRRVSNTLAGCHGGTNVLCARACLGLPGVVA
SGGADMSLQVSRLVDESRDNTGGGGGGSSTELHRLKLAAPVLSMDFCPVS
APIFGGGGGTRELLLAGGMDGGSHLISVEDSSSSSSSGDGGGRSDDAVED
KDSDAGEEGKKNGVALLASMKNHAKYVVVCRWAPDGSAFVTASHDKVVTL
YTLRAG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf