prot_L-elsbetiae_contig13700.2826.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig13700.2826.1
Unique Nameprot_L-elsbetiae_contig13700.2826.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length104
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig13700.2826.1 vs. uniprot
Match: A0A6H5KDJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ4_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.790e-8
Identity = 31/91 (34.07%), Postives = 49/91 (53.85%), Query Frame = 0 
Query:    1 GATSDGLHAVAYQSATFILSDTQFDRLAKIVGVEGKDRTAKKSRLKGKMRHQTWRGILTGAGLTPPPACVWNLLLRRSETMISSMETHYPW 91
            G  ++  HA+ +     I+SD Q + ++   GV     +  K+  +   +++ WR  L  A L   P C WN++LRRS TM++SME H PW
Sbjct:   44 GVDAEDRHALQFLDGFLIVSDHQLEVMSASFGVGSGTHSGIKAGFRKAFKNR-WRHYLATANLDLAPPCAWNMVLRRSPTMMNSMEAHTPW 133
[Close]
BLAST of mRNA_L-elsbetiae_contig13700.2826.1 vs. uniprot
Match: A0A6H5JA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA60_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 8.710e-8
Identity = 32/94 (34.04%), Postives = 50/94 (53.19%), Query Frame = 0 
Query:    1 GATSDGLHAVAYQSATFILSDTQFDRLAKIVGVEGKDRTAKKSRLKGKMRHQTWRGI---LTGAGLTPPPACVWNLLLRRSETMISSMETHYPW 91
            GA  D L+ + +     +LS  Q + LA   G+   D +  +  +  K R  + R +   + G+ + PP  C WN+LLRRS +MI+S+E H PW
Sbjct:  282 GAEVDRLYPLKFSDGNLVLSSQQLEALAIQTGIP--DTSLAEMAVAVKERWSSLRRLSQAIAGSAVVPPETCAWNMLLRRSPSMIASLEAHNPW 373
[Close]
BLAST of mRNA_L-elsbetiae_contig13700.2826.1 vs. uniprot
Match: D7G5J4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J4_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 4.080e-5
Identity = 20/38 (52.63%), Postives = 24/38 (63.16%), Query Frame = 0 
Query:   54 WRGILTGAGLTPPPACVWNLLLRRSETMISSMETHYPW 91
            WR     A L   P C WN++LRRS TM++SME H PW
Sbjct:   27 WRHYFAMANLDLAPPCAWNMVLRRSPTMMNSMEAHTPW 64
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13700.2826.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KDJ4_9PHAE2.790e-834.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA60_9PHAE8.710e-834.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5J4_ECTSI4.080e-552.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 53..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13700contigL-elsbetiae_contig13700:1784..2812 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13700.2826.1mRNA_L-elsbetiae_contig13700.2826.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig13700 1784..2813 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig13700.2826.1 ID=prot_L-elsbetiae_contig13700.2826.1|Name=mRNA_L-elsbetiae_contig13700.2826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
GATSDGLHAVAYQSATFILSDTQFDRLAKIVGVEGKDRTAKKSRLKGKMR
HQTWRGILTGAGLTPPPACVWNLLLRRSETMISSMETHYPWKETQHNLGA
ARSV
back to top