mRNA_L-elsbetiae_contig13700.2826.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13700.2826.1
Unique NamemRNA_L-elsbetiae_contig13700.2826.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig13700.2826.1 vs. uniprot
Match: A0A6H5KDJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ4_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.790e-8
Identity = 31/91 (34.07%), Postives = 49/91 (53.85%), Query Frame = 1 
Query:    1 GATSDGLHAVAYQSATFILSDTQFDRLAKIVGVEGKDRTAKKSRLKGKMRHQTWRGILTGAGLTPPPACVWNLLLRRSETMISSMETHYPW 273
            G  ++  HA+ +     I+SD Q + ++   GV     +  K+  +   +++ WR  L  A L   P C WN++LRRS TM++SME H PW
Sbjct:   44 GVDAEDRHALQFLDGFLIVSDHQLEVMSASFGVGSGTHSGIKAGFRKAFKNR-WRHYLATANLDLAPPCAWNMVLRRSPTMMNSMEAHTPW 133
[Close]
BLAST of mRNA_L-elsbetiae_contig13700.2826.1 vs. uniprot
Match: A0A6H5JA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA60_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 8.710e-8
Identity = 32/94 (34.04%), Postives = 50/94 (53.19%), Query Frame = 1 
Query:    1 GATSDGLHAVAYQSATFILSDTQFDRLAKIVGVEGKDRTAKKSRLKGKMRHQTWRGI---LTGAGLTPPPACVWNLLLRRSETMISSMETHYPW 273
            GA  D L+ + +     +LS  Q + LA   G+   D +  +  +  K R  + R +   + G+ + PP  C WN+LLRRS +MI+S+E H PW
Sbjct:  282 GAEVDRLYPLKFSDGNLVLSSQQLEALAIQTGIP--DTSLAEMAVAVKERWSSLRRLSQAIAGSAVVPPETCAWNMLLRRSPSMIASLEAHNPW 373
[Close]
BLAST of mRNA_L-elsbetiae_contig13700.2826.1 vs. uniprot
Match: D7G5J4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J4_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 4.080e-5
Identity = 20/38 (52.63%), Postives = 24/38 (63.16%), Query Frame = 1 
Query:  160 WRGILTGAGLTPPPACVWNLLLRRSETMISSMETHYPW 273
            WR     A L   P C WN++LRRS TM++SME H PW
Sbjct:   27 WRHYFAMANLDLAPPCAWNMVLRRSPTMMNSMEAHTPW 64
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13700.2826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KDJ4_9PHAE2.790e-834.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA60_9PHAE8.710e-834.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5J4_ECTSI4.080e-552.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13700contigL-elsbetiae_contig13700:1784..2813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size314
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815534.869567-CDS-L-elsbetiae_contig13700:1783..20161622815534.869567-CDS-L-elsbetiae_contig13700:1783..2016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13700 1784..2016 +
1691682945.5574305-CDS-L-elsbetiae_contig13700:1783..20161691682945.5574305-CDS-L-elsbetiae_contig13700:1783..2016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13700 1784..2016 +
1622815534.880471-CDS-L-elsbetiae_contig13700:2733..28121622815534.880471-CDS-L-elsbetiae_contig13700:2733..2812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13700 2734..2812 +
1691682945.568497-CDS-L-elsbetiae_contig13700:2733..28121691682945.568497-CDS-L-elsbetiae_contig13700:2733..2812Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13700 2734..2812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13700.2826.1prot_L-elsbetiae_contig13700.2826.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13700 1784..2812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13700.2826.1

>prot_L-elsbetiae_contig13700.2826.1 ID=prot_L-elsbetiae_contig13700.2826.1|Name=mRNA_L-elsbetiae_contig13700.2826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
GATSDGLHAVAYQSATFILSDTQFDRLAKIVGVEGKDRTAKKSRLKGKMR
HQTWRGILTGAGLTPPPACVWNLLLRRSETMISSMETHYPWKETQHNLGA
ARSV
back to top

mRNA from alignment at L-elsbetiae_contig13700:1784..2813+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13700.2826.1 ID=mRNA_L-elsbetiae_contig13700.2826.1|Name=mRNA_L-elsbetiae_contig13700.2826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1030bp|location=Sequence derived from alignment at L-elsbetiae_contig13700:1784..2813+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGCTACCTCAGACGGGTTGCATGCAGTGGCATATCAGAGTGCCACGTT
CATTCTGTCCGACACTCAATTTGACCGGCTGGCTAAAATCGTGGGCGTAG
AAGGAAAAGATCGCACGGCGAAGAAGTCAAGGTTAAAAGGGAAAATGCGT
CACCAAACCTGGCGAGGAATTCTAACCGGAGCAGGTCTGACGCCGCCTCC
TGCCTGCGTTTGGAACTTGCTACTACGGCGCAGGTACTCGCCAAAAAAGG
TCGCCATAAGCGGTCGTATTTCGTAGGGGTTCCTAGGGGTTCGTCGTGGA
AGTGTTCATTTGATCGATTCAGTACCACGCAGGTGGGCGAATGCACCCCT
TGCGTGGGGGGTTTGAAGGTAGCATGTGTGTCCTACTGTGTCGTTGTATG
GACATCGACAATGTCAAAAACGCCCCAAAGTCGATAAGGTGTCCACCACA
CCACGATGGCAACGTGCTTCTTCCTCGAGCCGGGTTGGCAAACCTTGTCG
AGGTTAGAAACCGCCTCCGAAGAAGCGCACGTTGCCACCGTTTCGAAATC
GCACCTTCAAGAGCAACTTGTTTCAGCGTCGCAAAAATGGTCTCAACACA
AGATATTGTCCGTACCAATCTCTACTACCATACAAGATTTGCAAACTCAA
CTTGAAAATATTAATTACGCCGATCGTACGCAAGAGACGAACAAGGTTGA
ATTCCCACCGCAGTCGGGCTAGGCCAAATCCTCGCCAAGAAATGCAATTT
TTCACCTGCGCAATTCACAATGTACAAACTAGCACCGCCATTTGCGAAAA
CATGCAACAGGGGGGCGAATCCGTAACTGGAGCTGCTTATGATCTGTTCC
ATGTGTCCAACTGGAAAATATTCCCTGTTCACCCGCGTGCATTCTCATAG
CACTACGATTCACCTCTTACGTTTAACGACACGTCCTACTTCTCGTGCAG
TGAAACAATGATTTCCAGCATGGAGACCCACTACCCTTGGAAGGAGACCC
AACACAATCTCGGGGCAGCAAGAAGCGTGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13700:1784..2813+

>mRNA_L-elsbetiae_contig13700.2826.1 ID=mRNA_L-elsbetiae_contig13700.2826.1|Name=mRNA_L-elsbetiae_contig13700.2826.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig13700:1784..2813+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGCTACCTCAGACGGGTTGCATGCAGTGGCATATCAGAGTGCCACGTT
CATTCTGTCCGACACTCAATTTGACCGGCTGGCTAAAATCGTGGGCGTAG
AAGGAAAAGATCGCACGGCGAAGAAGTCAAGGTTAAAAGGGAAAATGCGT
CACCAAACCTGGCGAGGAATTCTAACCGGAGCAGGTCTGACGCCGCCTCC
TGCCTGCGTTTGGAACTTGCTACTACGGCGCAGGGTGCTACCTCAGACGG
GTTGCATGCAGTGGCATATCAGAGTGCCACGTTCATTCTGTCCGACACTC
AATTTGACCGGCTGGCTAAAATCGTGGGCGTAGAAGGAAAAGATCGCACG
GCGAAGAAGTCAAGGTTAAAAGGGAAAATGCGTCACCAAACCTGGCGAGG
AATTCTAACCGGAGCAGGTCTGACGCCGCCTCCTGCCTGCGTTTGGAACT
TGCTACTACGGCGCAGTGAAACAATGATTTCCAGCATGGAGACCCACTAC
CCTTGGAAGGAGACCCAACACAATCTCGGGGCAGCAAGAAGCGTGTGAAA
CAATGATTTCCAGCATGGAGACCCACTACCCTTGGAAGGAGACCCAACAC
AATCTCGGGGCAGCAAGAAGCGTG
back to top