prot_L-elsbetiae_contig13671.2793.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig13671.2793.1
Unique Nameprot_L-elsbetiae_contig13671.2793.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length299
Homology
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BLAST of mRNA_L-elsbetiae_contig13671.2793.1 vs. uniprot
Match: A0A6H5JT76_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT76_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 2.580e-54
Identity = 145/284 (51.06%), Postives = 167/284 (58.80%), Query Frame = 0 
Query:   19 RWKEAVALLEEMIA------GGPKLAPSVVSYNSAITACARCNKMAPALRLLGEMSSRSGLGXXXXXXXXXXXXXXXXXXXXXXXXXXEEMRASGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAWEQATDWLTDVRMANGGGLPSAAAYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAQRPTVECYNAVVLGFAMTGDMKGALQTLKEDVPRAGLKPNTEGFNHAIQGYARLKDWRMALTLLDEQRSG 296
            RWKEA+ LLEEMIA      GGPK+ PSVVSYN+AITAC+R NK+  ALRLL EMSSRSGL  XXXXXXXXXXXXXXXXXXXXXXXXX  MRA+G+                                                        GAWEQATDWLTD+RMA GG LP   AYAA                               EAQRPT+ECY+AVVLG A+ GD K AL+ LK DVP+AGL+PNT+GFNH +QG+A++ DW+ A+T+LDEQRSG
Sbjct:  196 RWKEAIELLEEMIAAGNDSNGGPKVTPSVVSYNAAITACSRANKVPAALRLLDEMSSRSGLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXMRAAGMEPDLVCLKGAMEACRSKGAPKEAGVVLEQVRELDPRPSASTMADVLTSAIAACVTEGAWEQATDWLTDIRMARGGRLPPPEAYAAAANACARAGQGVRARALIAELDNGGKD----EAQRPTLECYDAVVLGSALAGDPKEALRILKVDVPKAGLQPNTQGFNHVLQGFAKVGDWKTAVTVLDEQRSG 475
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13671.2793.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JT76_9PHAE2.580e-5451.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 270..292
e-value: 0.26
score: 11.6
coord: 233..256
e-value: 1.0
score: 9.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 42..76
e-value: 0.0013
score: 16.7
coord: 78..112
e-value: 1.0E-7
score: 29.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 39..89
e-value: 1.1E-8
score: 35.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 266..298
score: 6.939
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 187..221
score: 6.018
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 230..265
score: 8.736
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 111..145
score: 7.235
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 150..186
score: 5.009
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 76..110
score: 12.123
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 40..75
score: 9.098
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 153..298
e-value: 5.4E-20
score: 73.9
coord: 9..152
e-value: 2.6E-34
score: 121.0
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 12..137
coord: 157..292

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13671contigL-elsbetiae_contig13671:97..2272 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13671.2793.1mRNA_L-elsbetiae_contig13671.2793.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig13671 97..2272 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig13671.2793.1 ID=prot_L-elsbetiae_contig13671.2793.1|Name=mRNA_L-elsbetiae_contig13671.2793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=299bp
PPRAPTRPDPARAQKKKKRWKEAVALLEEMIAGGPKLAPSVVSYNSAITA
CARCNKMAPALRLLGEMSSRSGLGPDLYSYAAVMSGVARARDPQRALRLL
EEMRASGVEPDTVCLAAAMEACERSGASGEAAEVLEQVRALDPPPSTETL
ADILTSAIRACVSGGAWEQATDWLTDVRMANGGGLPSAAAYAAAANACAR
AGQGVRARALVAELEGGGSGRGNGEAQRPTVECYNAVVLGFAMTGDMKGA
LQTLKEDVPRAGLKPNTEGFNHAIQGYARLKDWRMALTLLDEQRSGER*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf