mRNA_L-elsbetiae_contig13671.2793.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13671.2793.1
Unique NamemRNA_L-elsbetiae_contig13671.2793.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig13671.2793.1 vs. uniprot
Match: A0A6H5JT76_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT76_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 2.580e-54
Identity = 145/284 (51.06%), Postives = 167/284 (58.80%), Query Frame = 1 
Query:   55 RWKEAVALLEEMIA------GGPKLAPSVVSYNSAITACARCNKMAPALRLLGEMSSRSGLGXXXXXXXXXXXXXXXXXXXXXXXXXXEEMRASGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAWEQATDWLTDVRMANGGGLPSAAAYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAQRPTVECYNAVVLGFAMTGDMKGALQTLKEDVPRAGLKPNTEGFNHAIQGYARLKDWRMALTLLDEQRSG 888
            RWKEA+ LLEEMIA      GGPK+ PSVVSYN+AITAC+R NK+  ALRLL EMSSRSGL  XXXXXXXXXXXXXXXXXXXXXXXXX  MRA+G+                                                        GAWEQATDWLTD+RMA GG LP   AYAA                               EAQRPT+ECY+AVVLG A+ GD K AL+ LK DVP+AGL+PNT+GFNH +QG+A++ DW+ A+T+LDEQRSG
Sbjct:  196 RWKEAIELLEEMIAAGNDSNGGPKVTPSVVSYNAAITACSRANKVPAALRLLDEMSSRSGLSPXXXXXXXXXXXXXXXXXXXXXXXXXXXMRAAGMEPDLVCLKGAMEACRSKGAPKEAGVVLEQVRELDPRPSASTMADVLTSAIAACVTEGAWEQATDWLTDIRMARGGRLPPPEAYAAAANACARAGQGVRARALIAELDNGGKD----EAQRPTLECYDAVVLGSALAGDPKEALRILKVDVPKAGLQPNTQGFNHVLQGFAKVGDWKTAVTVLDEQRSG 475
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13671.2793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JT76_9PHAE2.580e-5451.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13671contigL-elsbetiae_contig13671:97..2272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.0
Seed ortholog evalue6.4e-48
Seed eggNOG ortholog2880.D7FIX3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-07_007800.1
Exons2
Model size897
Cds size897
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.9688723-CDS-L-elsbetiae_contig13671:96..5071622815531.9688723-CDS-L-elsbetiae_contig13671:96..507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13671 97..507 +
1691682944.0944898-CDS-L-elsbetiae_contig13671:96..5071691682944.0944898-CDS-L-elsbetiae_contig13671:96..507Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13671 97..507 +
1622815531.9825802-CDS-L-elsbetiae_contig13671:1786..22721622815531.9825802-CDS-L-elsbetiae_contig13671:1786..2272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13671 1787..2272 +
1691682944.1073828-CDS-L-elsbetiae_contig13671:1786..22721691682944.1073828-CDS-L-elsbetiae_contig13671:1786..2272Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13671 1787..2272 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13671.2793.1prot_L-elsbetiae_contig13671.2793.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13671 97..2272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13671.2793.1

>prot_L-elsbetiae_contig13671.2793.1 ID=prot_L-elsbetiae_contig13671.2793.1|Name=mRNA_L-elsbetiae_contig13671.2793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=299bp
PPRAPTRPDPARAQKKKKRWKEAVALLEEMIAGGPKLAPSVVSYNSAITA
CARCNKMAPALRLLGEMSSRSGLGPDLYSYAAVMSGVARARDPQRALRLL
EEMRASGVEPDTVCLAAAMEACERSGASGEAAEVLEQVRALDPPPSTETL
ADILTSAIRACVSGGAWEQATDWLTDVRMANGGGLPSAAAYAAAANACAR
AGQGVRARALVAELEGGGSGRGNGEAQRPTVECYNAVVLGFAMTGDMKGA
LQTLKEDVPRAGLKPNTEGFNHAIQGYARLKDWRMALTLLDEQRSGER*
back to top

mRNA from alignment at L-elsbetiae_contig13671:97..2272+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13671.2793.1 ID=mRNA_L-elsbetiae_contig13671.2793.1|Name=mRNA_L-elsbetiae_contig13671.2793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2176bp|location=Sequence derived from alignment at L-elsbetiae_contig13671:97..2272+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCCCCGCGCCCCGACCCGACCCGACCCCGCGCGGGCGCAAAAAAAAAA
AAAAAGATGGAAAGAGGCGGTAGCGCTGCTGGAAGAGATGATCGCGGGCG
GGCCGAAGCTAGCCCCGTCGGTGGTGAGCTACAACTCGGCCATTACGGCG
TGCGCGAGGTGCAACAAGATGGCGCCGGCGCTGCGGCTGCTCGGGGAGAT
GTCCTCGAGGTCCGGGCTCGGCCCGGACCTCTACAGCTACGCGGCGGTCA
TGTCGGGCGTGGCCAGGGCCCGCGACCCGCAGCGGGCGCTGCGACTCCTT
GAGGAGATGCGCGCGTCGGGTGTGGAGCCAGACACGGTCTGCCTCGCCGC
CGCGATGGAAGCGTGCGAGAGGAGCGGGGCTTCGGGGGAGGCCGCGGAAG
TCCTCGAGCAGGTGGGCGCGGGTGCGGTGTGTGTGCACGCGCGCCTCTGA
GAGACTGCAAAATATATACTCTTTGCAGCCGTTTCATTTTTTTCTTTTTG
CGTTTTTTTTTTTTTTTTTTTTTTTTCAGGGGCCCTCGCGCAGGTGGGCG
CCCGTGTGGCGTGGGCGCGCGCGCGCCTCTGAGAGGACTACTACTGTTTG
CAGCCGTTTCGGTTTTTTCCTTGCGCTTTTTTTTTTTTTTTCAGGGGGGG
CCCCGCCCTCTGCCCGCGCTCCCTGTTCGAAGCAACAAGGGGACAGGAGG
GTGGTGTTGTTGTTTGTGATTCTTGGTGTGTGAGTGTGTGGGCGCACTGG
CAGGTTCGAGGCTGGAAGCGAATGCAGCGAGCACGGGTGTGCCGGAGCTC
AGTTCGGGCCTCATGGCTGTCTATGCACGTGTTTAGCCGGGAGAATCGCT
CTCGCTTTTTGGGCGGCTTGTTGGAAGTAGGTTTTTGTGTGTGTTGCTGT
TTCTCCGAGGCGTATGTAGTGACCCCCCTTTTAAAGCCATAAGCTCCAGC
TGTATACCCCGGGTATTGAGGGAAGTTGTTAGCCTCAGAAGGCTGGGTTG
CTTTATCTGGACGGAAAAGTGTGTTTCTCGGGGAGTTAGTTGTCTATCTG
CGCGAGCTGTGGCTTCTGTCGGAAATCTATTCCTCGTTTTTTTCCCTTAC
GCTTTCGCACTCACAGGATGAAGATGACAAATAGCTCTTGGCCGCGATGA
CTGCTGTCGAGCGATGTAGTCAATTTACCAACTAACGGAACTAACTGCCT
GTGTGTGTTTTGAAGTAAATTCCTTTCTACATAACGCTGAACTCCCCCCC
CCCCCCCCCGAAAAAAAAAAAACGAATATAAAAACTCACACAACAACCCC
CTAATTCATTTTCGTGGGGGGGGGTGGGGGGGGGGGGGGGGGGGTAGCCN
NNNNNNNNNGGAAAGACAAACCTTTTGGGTTCCGAAGGGGGCCAAAAATT
GCAAGGGGGACGAAAACCCCATAGGGCGGCGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGCACAATCCACACCTCAGCAGCGCGAGGGGAGGTAGTA
TCTACAGCCTGCGTTCACAGGCATGCTTCCCATGCGATACAACTCCAAAT
CCGTGCGGTGAACGAAGACTTGATGAATCCGTGCGGTGAACGAAGACTTG
ATGGGGCTAAAAATCGGCGCCCCCTTATGTACCTCCTGCCCCCCCCCCCC
ACCCATACCTCTCCCGTGCCGCCCCCAACAACACACGCAGGTGCGGGCGC
TGGACCCGCCGCCGAGCACGGAGACCCTCGCGGACATCCTCACCTCCGCC
ATCCGGGCCTGCGTGTCCGGGGGCGCCTGGGAGCAGGCCACGGACTGGCT
CACGGACGTCCGGATGGCCAACGGGGGCGGGCTGCCGTCGGCGGCGGCCT
ACGCCGCCGCCGCCAACGCCTGCGCGCGCGCCGGCCAGGGAGTGCGCGCC
CGCGCGCTCGTCGCGGAGCTGGAGGGCGGCGGCAGCGGCCGCGGCAACGG
CGAGGCCCAGCGGCCGACAGTGGAGTGCTACAACGCGGTCGTGCTCGGCT
TCGCCATGACCGGGGACATGAAGGGGGCCCTGCAGACCCTCAAGGAGGAC
GTGCCGAGGGCGGGCCTGAAGCCGAACACCGAGGGGTTTAACCACGCGAT
ACAAGGGTACGCGAGGCTGAAGGACTGGAGGATGGCGCTCACGCTCCTCG
ACGAGCAGCGATCAGGCGAGAGATGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13671:97..2272+

>mRNA_L-elsbetiae_contig13671.2793.1 ID=mRNA_L-elsbetiae_contig13671.2793.1|Name=mRNA_L-elsbetiae_contig13671.2793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1794bp|location=Sequence derived from alignment at L-elsbetiae_contig13671:97..2272+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCCCCGCGCCCCGACCCGACCCGACCCCGCGCGGGCGCAAAAAAAAAA
AAAAAGATGGAAAGAGGCGGTAGCGCTGCTGGAAGAGATGATCGCGGGCG
GGCCGAAGCTAGCCCCGTCGGTGGTGAGCTACAACTCGGCCATTACGGCG
TGCGCGAGGTGCAACAAGATGGCGCCGGCGCTGCGGCTGCTCGGGGAGAT
GTCCTCGAGGTCCGGGCTCGGCCCGGACCTCTACAGCTACGCGGCGGTCA
TGTCGGGCGTGGCCAGGGCCCGCGACCCGCAGCGGGCGCTGCGACTCCTT
GAGGAGATGCGCGCGTCGGGTGTGGAGCCAGACACGGTCTGCCTCGCCGC
CGCGATGGAAGCGTGCGAGAGGAGCGGGGCTTCGGGGGAGGCCGCGGAAG
TCCTCGAGCAGCCCCCCCGCGCCCCGACCCGACCCGACCCCGCGCGGGCG
CAAAAAAAAAAAAAAAGATGGAAAGAGGCGGTAGCGCTGCTGGAAGAGAT
GATCGCGGGCGGGCCGAAGCTAGCCCCGTCGGTGGTGAGCTACAACTCGG
CCATTACGGCGTGCGCGAGGTGCAACAAGATGGCGCCGGCGCTGCGGCTG
CTCGGGGAGATGTCCTCGAGGTCCGGGCTCGGCCCGGACCTCTACAGCTA
CGCGGCGGTCATGTCGGGCGTGGCCAGGGCCCGCGACCCGCAGCGGGCGC
TGCGACTCCTTGAGGAGATGCGCGCGTCGGGTGTGGAGCCAGACACGGTC
TGCCTCGCCGCCGCGATGGAAGCGTGCGAGAGGAGCGGGGCTTCGGGGGA
GGCCGCGGAAGTCCTCGAGCAGGTGCGGGCGCTGGACCCGCCGCCGAGCA
CGGAGACCCTCGCGGACATCCTCACCTCCGCCATCCGGGCCTGCGTGTCC
GGGGGCGCCTGGGAGCAGGCCACGGACTGGCTCACGGACGTCCGGATGGC
CAACGGGGGCGGGCTGCCGTCGGCGGCGGCCTACGCCGCCGCCGCCAACG
CCTGCGCGCGCGCCGGCCAGGGAGTGCGCGCCCGCGCGCTCGTCGCGGAG
CTGGAGGGCGGCGGCAGCGGCCGCGGCAACGGCGAGGCCCAGCGGCCGAC
AGTGGAGTGCTACAACGCGGTCGTGCTCGGCTTCGCCATGACCGGGGACA
TGAAGGGGGCCCTGCAGACCCTCAAGGAGGACGTGCCGAGGGCGGGCCTG
AAGCCGAACACCGAGGGGTTTAACCACGCGATACAAGGGTACGCGAGGCT
GAAGGACTGGAGGATGGCGCTCACGCTCCTCGACGAGCAGCGATCAGGCG
AGAGATGAGTGCGGGCGCTGGACCCGCCGCCGAGCACGGAGACCCTCGCG
GACATCCTCACCTCCGCCATCCGGGCCTGCGTGTCCGGGGGCGCCTGGGA
GCAGGCCACGGACTGGCTCACGGACGTCCGGATGGCCAACGGGGGCGGGC
TGCCGTCGGCGGCGGCCTACGCCGCCGCCGCCAACGCCTGCGCGCGCGCC
GGCCAGGGAGTGCGCGCCCGCGCGCTCGTCGCGGAGCTGGAGGGCGGCGG
CAGCGGCCGCGGCAACGGCGAGGCCCAGCGGCCGACAGTGGAGTGCTACA
ACGCGGTCGTGCTCGGCTTCGCCATGACCGGGGACATGAAGGGGGCCCTG
CAGACCCTCAAGGAGGACGTGCCGAGGGCGGGCCTGAAGCCGAACACCGA
GGGGTTTAACCACGCGATACAAGGGTACGCGAGGCTGAAGGACTGGAGGA
TGGCGCTCACGCTCCTCGACGAGCAGCGATCAGGCGAGAGATGA
back to top