prot_L-elsbetiae_contig13588.2726.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig13588.2726.1
Unique Nameprot_L-elsbetiae_contig13588.2726.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length90
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 9.370e-31
Identity = 68/106 (64.15%), Postives = 75/106 (70.75%), Query Frame = 0 
Query:    2 EDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKV------------------KGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 89
            +DPS+MR SRRIARSG+ASRREAER+VEAGVV VNG  VQTPALNVG RDIVKV                  +G+ LERPE HT +LWM HK R ELVTRHD  GR
Sbjct:  108 KDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVGLFQQPGNGTDCFTFVQGKVLERPESHTPKLWMVHKMRNELVTRHDPEGR 213
[Close]
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A6H5J9J6_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J6_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 9.920e-18
Identity = 45/55 (81.82%), Postives = 50/55 (90.91%), Query Frame = 0 
Query:    1 MEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKV 55
            ++DPS+MR SRRIARSG+ASRREAER+VEAGVV VNG  VQTPALNVG RDIVKV
Sbjct:  107 IKDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKV 161
[Close]
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A350AJK0_9RHOB (Pseudouridine synthase (Fragment) n=2 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A350AJK0_9RHOB)

HSP 1 Score: 76.6 bits (187), Expect = 1.820e-14
Identity = 42/77 (54.55%), Postives = 51/77 (66.23%), Query Frame = 0 
Query:   13 IARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 89
            IAR+G+ASRR+AE+LVE G VTVNG PV +PA NVG +D V V GR L+ PE     LW+ HK    + T  D  GR
Sbjct:   15 IARAGVASRRDAEKLVEEGAVTVNGKPVTSPATNVGPKDRVAVNGRVLDPPEP--TRLWLYHKPTGLVTTAKDEEGR 89
[Close]
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A3M2ENI0_9PROT (Pseudouridine synthase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M2ENI0_9PROT)

HSP 1 Score: 75.1 bits (183), Expect = 3.550e-14
Identity = 43/87 (49.43%), Postives = 55/87 (63.22%), Query Frame = 0 
Query:    3 DPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 89
            D S  R +RR+AR+G+ASRR AERL+  G V VNG  + TPALNVG RD+++V GR L  PE   + LW  HK    + +  D  GR
Sbjct:    5 DDSAERIARRLARAGLASRRGAERLIAEGRVRVNGRLIDTPALNVGPRDLIEVDGRPLPAPEP--VRLWRYHKPAGLVTSAADEKGR 89
[Close]
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A4R7BRR5_9HYPH (Pseudouridine synthase n=2 Tax=Enterovirga rhinocerotis TaxID=1339210 RepID=A0A4R7BRR5_9HYPH)

HSP 1 Score: 75.9 bits (185), Expect = 4.240e-14
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 0 
Query:    4 PSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 89
            PS  R ++ IAR+G+ASRR+AE ++EAG VT+NG P+ +PA+NVG  D++ V G AL  P      LW+ HK R  + T  D  GR
Sbjct:  104 PSEERIAKVIARAGVASRRDAEAMIEAGRVTLNGAPLTSPAINVGPNDVITVDGEAL--PSRERTRLWLFHKPRGLVTTFRDPEGR 187
[Close]
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A1H7NFQ5_9RHOB (Pseudouridine synthase n=2 Tax=Roseovarius azorensis TaxID=1287727 RepID=A0A1H7NFQ5_9RHOB)

HSP 1 Score: 74.7 bits (182), Expect = 4.410e-14
Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 0 
Query:    1 MEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 89
            ++ PS  R ++ IAR+G+ASRREAERL+EAG VTVNG  +   ALNV   D + V GRAL+ PE     LW+ HK    + T  D  GR
Sbjct:   21 IKPPSGERIAKVIARAGIASRREAERLIEAGRVTVNGRKIDRAALNVTPNDKIAVDGRALDAPEP--ARLWLYHKPVGRVTTSRDEQGR 107
[Close]
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A6L8LKL0_9RHOB (Pseudouridine synthase n=2 Tax=Thalassobius TaxID=335927 RepID=A0A6L8LKL0_9RHOB)

HSP 1 Score: 74.7 bits (182), Expect = 6.770e-14
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 0 
Query:    2 EDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 89
            + P+  R ++ IAR+G+ASRREAE+L+EAG V+VNG  + +PALNV  RD V V G+ LE PE     +W+ HK    + T  D  GR
Sbjct:    3 DTPAGERIAKVIARAGLASRREAEKLIEAGRVSVNGKKIDSPALNVTARDKVVVDGKTLEAPEPP--RIWLYHKPTGLVTTHKDEQGR 88
[Close]
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A3SRI5_ROSNI (Pseudouridine synthase n=5 Tax=Roseovarius TaxID=74030 RepID=A3SRI5_ROSNI)

HSP 1 Score: 73.9 bits (180), Expect = 7.480e-14
Identity = 42/77 (54.55%), Postives = 50/77 (64.94%), Query Frame = 0 
Query:   13 IARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 89
            IAR+G+ASRREAER+VEAG VTVNG  + +PALNV   D + V GRAL  PE     LW+ HK    + T  D  GR
Sbjct:   15 IARAGLASRREAERMVEAGRVTVNGRKIDSPALNVTPSDKITVDGRALATPEPP--RLWLYHKPTGLVTTTRDEQGR 89
[Close]
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A2M7F0C1_9RHOB (Pseudouridine synthase n=1 Tax=Rhodobacteraceae bacterium CG17_big_fil_post_rev_8_21_14_2_50_63_15 TaxID=1974082 RepID=A0A2M7F0C1_9RHOB)

HSP 1 Score: 73.9 bits (180), Expect = 7.570e-14
Identity = 41/77 (53.25%), Postives = 50/77 (64.94%), Query Frame = 0 
Query:   13 IARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 89
            IAR+G+ASRR+AERL+EAG VTVNG  + +PALNV   D + V GR LE PE     LW+ HK    + T  D  GR
Sbjct:   19 IARAGIASRRDAERLIEAGRVTVNGQKIVSPALNVTPADRITVDGRPLEAPEP--ARLWLYHKPAGRVTTSRDEQGR 93
[Close]
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A4Q2A4M9_9RHOB (Pseudouridine synthase n=2 Tax=unclassified Roseovarius TaxID=2614913 RepID=A0A4Q2A4M9_9RHOB)

HSP 1 Score: 73.9 bits (180), Expect = 7.570e-14
Identity = 45/86 (52.33%), Postives = 53/86 (61.63%), Query Frame = 0 
Query:    4 PSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 89
            P   R ++ IAR+G ASRREAERL+EAG VTVNG  +   ALNV   D V V GRAL+ PE     LW+ HK R  + T  D  GR
Sbjct:    6 PKGERIAKVIARAGRASRREAERLIEAGRVTVNGQKITRAALNVTPADRVTVDGRALDAPEPP--RLWLYHKPRGRVTTTSDEQGR 89
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDE8_ECTSI9.370e-3164.15RNA pseudouridylate synthase domain-containing pro... [more]
A0A6H5J9J6_9PHAE9.920e-1881.82S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A350AJK0_9RHOB1.820e-1454.55Pseudouridine synthase (Fragment) n=2 Tax=Rhodobac... [more]
A0A3M2ENI0_9PROT3.550e-1449.43Pseudouridine synthase n=1 Tax=Alphaproteobacteria... [more]
A0A4R7BRR5_9HYPH4.240e-1447.67Pseudouridine synthase n=2 Tax=Enterovirga rhinoce... [more]
A0A1H7NFQ5_9RHOB4.410e-1449.44Pseudouridine synthase n=2 Tax=Roseovarius azorens... [more]
A0A6L8LKL0_9RHOB6.770e-1447.73Pseudouridine synthase n=2 Tax=Thalassobius TaxID=... [more]
A3SRI5_ROSNI7.480e-1454.55Pseudouridine synthase n=5 Tax=Roseovarius TaxID=7... [more]
A0A2M7F0C1_9RHOB7.570e-1453.25Pseudouridine synthase n=1 Tax=Rhodobacteraceae ba... [more]
A0A4Q2A4M9_9RHOB7.570e-1452.33Pseudouridine synthase n=2 Tax=unclassified Roseov... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 7..68
e-value: 5.2E-6
score: 36.0
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 13..53
e-value: 4.6E-10
score: 39.1
IPR002942RNA-binding S4 domainPROSITEPS50889S4coord: 7..73
score: 10.565
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 4..62
e-value: 4.5E-15
score: 56.7
NoneNo IPR availablePANTHERPTHR21600:SF2RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 3..89
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 3..89
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 11..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13588contigL-elsbetiae_contig13588:3634..4218 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13588.2726.1mRNA_L-elsbetiae_contig13588.2726.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig13588 3023..4218 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig13588.2726.1 ID=prot_L-elsbetiae_contig13588.2726.1|Name=mRNA_L-elsbetiae_contig13588.2726.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
MEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLR
DIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGRW
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002942S4_RNA-bd
IPR036986S4_RNA-bd_sf