|
|
Homology
BLAST of mRNA_L-elsbetiae_contig13544.2708.1 vs. uniprot
Match: D7G0M5_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M5_ECTSI) HSP 1 Score: 74.7 bits (182), Expect = 2.650e-11 Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 0
Query: 249 ALAHCGEVNRALELMREMKEDAGIEPNENTYSAAILACGNGG 290
ALAHCGEV+ ALEL+ EMKE+AGIEPNE TY+A ILACGNGG
Sbjct: 711 ALAHCGEVDLALELLSEMKEEAGIEPNEQTYAAVILACGNGG 752
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 112..200
e-value: 4.3E-24
score: 87.6 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 2..111
e-value: 1.7E-32
score: 114.2 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 201..290
e-value: 3.9E-24
score: 87.6 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 99..132
e-value: 2.4E-5
score: 22.2
coord: 206..240
e-value: 2.5E-6
score: 25.3
coord: 29..63
e-value: 1.1E-7
score: 29.6
coord: 134..167
e-value: 6.3E-7
score: 27.2
coord: 64..97
e-value: 2.7E-7
score: 28.3
coord: 169..194
e-value: 4.3E-4
score: 18.3
coord: 243..276
e-value: 1.1E-5
score: 23.3 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 238..286
e-value: 4.4E-10
score: 39.6
coord: 26..73
e-value: 3.1E-10
score: 40.1
coord: 131..180
e-value: 3.7E-9
score: 36.7 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 99..129
e-value: 0.0012
score: 18.9
coord: 207..236
e-value: 0.0025
score: 18.0 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 97..131
score: 10.983 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 239..269
score: 8.736 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 132..166
score: 10.523 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 27..61
score: 11.542 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 62..96
score: 11.871 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 204..238
score: 10.885 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 167..201
score: 8.769 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 1..26
score: 5.93 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 175..288
coord: 10..235 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_L-elsbetiae_contig13544.2708.1 ID=prot_L-elsbetiae_contig13544.2708.1|Name=mRNA_L-elsbetiae_contig13544.2708.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=290bp
STWQVGEQWERALGFLREMPGLGVDPCVISYNTAISACAKCGRGDQALAL
LREMPSVGLAPDVISYNSAIAALGKSGQPDEAMQLMKEMPGRGLYADAIT
CSSALTALGNSGLWEEALVLLREMPAAGINPTVICYTAAIRACGEAGQSE
EALSLLREMPSAGVTANLFSYSAAISACAKSGQWEKGLALLNELPGLDPP
ITPNEFCYTAAITGCGIGGQWEQAVQTFRNMIANGVEPSVVGYTSAVSAL
AHCGEVNRALELMREMKEDAGIEPNENTYSAAILACGNGG back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011990 | TPR-like_helical_dom_sf |
| IPR002885 | Pentatricopeptide_repeat |
|