prot_L-elsbetiae_contig1351.2690.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1351.2690.1
Unique Nameprot_L-elsbetiae_contig1351.2690.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length46
Homology
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Match: D8LHK5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHK5_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 3.560e-15
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0
Query:   13 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKR 43
            DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKR
Sbjct:   31 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKR 61          
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Match: A0A8J7TBA4_ATRSP (RPAB4 protein (Fragment) n=1 Tax=Atractosteus spatula TaxID=7917 RepID=A0A8J7TBA4_ATRSP)

HSP 1 Score: 61.6 bits (148), Expect = 1.370e-11
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 0
Query:    3 LFVHASRAGADCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 44
            LF       ++C ++N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:    3 LFFFFPYVISECHTENEIKARDPIRCRECGYRIMYKKRTKRC 44          
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Match: R0L3R7_ANAPL (DNA-directed RNA polymerases I, II, and III subunit RPABC4 (Fragment) n=1 Tax=Anas platyrhynchos TaxID=8839 RepID=R0L3R7_ANAPL)

HSP 1 Score: 60.8 bits (146), Expect = 1.710e-11
Identity = 24/33 (72.73%), Postives = 31/33 (93.94%), Query Frame = 0
Query:   12 ADCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 44
            ++C ++N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:    3 SECHTENEIKARDPIRCRECGYRIMYKKRTKRC 35          
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Match: A0A8C5SZC9_LATLA (RNA polymerase II, I and III subunit K n=1 Tax=Laticauda laticaudata TaxID=8630 RepID=A0A8C5SZC9_LATLA)

HSP 1 Score: 61.6 bits (148), Expect = 2.350e-11
Identity = 25/32 (78.12%), Postives = 29/32 (90.62%), Query Frame = 0
Query:   13 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 44
            DC  +N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:   21 DCHKENEIKARDPIRCRECGYRIMYKKRTKRC 52          
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Match: A0A166GIH0_9AGAM (Uncharacterized protein n=2 Tax=unclassified Peniophora TaxID=2635284 RepID=A0A166GIH0_9AGAM)

HSP 1 Score: 61.2 bits (147), Expect = 2.480e-11
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 0
Query:    1 PPLFVHASRAGADCGSDNLIKAKDPIQCRQCGYRIMYKKRTKR 43
            PP+        ADCG++N IKA++PI+C++CG+RIMYKKRTKR
Sbjct:   22 PPIRQEMQYLCADCGAENEIKAREPIRCKECGHRIMYKKRTKR 64          
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Match: UPI001B87FE28 (DNA-directed RNA polymerase I n=2 Tax=Suillus TaxID=5379 RepID=UPI001B87FE28)

HSP 1 Score: 61.2 bits (147), Expect = 2.550e-11
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 0
Query:    4 FVHASRAG-----ADCGSDNLIKAKDPIQCRQCGYRIMYKKRTKR 43
            FVHA R       ADCG+ N IK+++PI+CR+CG+RIMYKKRTKR
Sbjct:   16 FVHAPRQDMEYICADCGAKNEIKSREPIRCRECGHRIMYKKRTKR 60          
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Match: A0A7R9QPU4_9ACAR (Hypothetical protein n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9QPU4_9ACAR)

HSP 1 Score: 62.0 bits (149), Expect = 2.760e-11
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 0
Query:   12 ADCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 44
            A+C  DN IK KDPI+CR+CGYRIMYKKRTKRC
Sbjct:   66 AECHHDNEIKPKDPIRCRECGYRIMYKKRTKRC 98          
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Match: A0A197K819_9FUNG (DNA-directed RNA polymerase I n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197K819_9FUNG)

HSP 1 Score: 60.8 bits (146), Expect = 2.770e-11
Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 0
Query:   12 ADCGSDNLIKAKDPIQCRQCGYRIMYKKRTKR 43
            A+CGSDN IK K+PI+C++CGYRIMYKKRTKR
Sbjct:   23 AECGSDNEIKPKEPIRCKECGYRIMYKKRTKR 54          
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Match: E2BHJ3_HARSA (DNA-directed RNA polymerases I, II, and III subunit RPABC4 (Fragment) n=2 Tax=Formicidae TaxID=36668 RepID=E2BHJ3_HARSA)

HSP 1 Score: 60.1 bits (144), Expect = 3.390e-11
Identity = 24/32 (75.00%), Postives = 29/32 (90.62%), Query Frame = 0
Query:   13 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 44
            +C +DN I+ KDPI+CR+CGYRIMYKKRTKRC
Sbjct:    3 ECHNDNEIRQKDPIRCRECGYRIMYKKRTKRC 34          
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Match: A0A7K9HX18_9AVES (RPAB4 protein (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7K9HX18_9AVES)

HSP 1 Score: 60.5 bits (145), Expect = 3.580e-11
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 0
Query:   13 DCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRC 44
            +C ++N IKA+DPI+CR+CGYRIMYKKRTKRC
Sbjct:   21 ECHTENEIKARDPIRCRECGYRIMYKKRTKRC 52          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1351.2690.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHK5_ECTSI3.560e-15100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J7TBA4_ATRSP1.370e-1161.90RPAB4 protein (Fragment) n=1 Tax=Atractosteus spat... [more]
R0L3R7_ANAPL1.710e-1172.73DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A8C5SZC9_LATLA2.350e-1178.13RNA polymerase II, I and III subunit K n=1 Tax=Lat... [more]
A0A166GIH0_9AGAM2.480e-1158.14Uncharacterized protein n=2 Tax=unclassified Penio... [more]
UPI001B87FE282.550e-1162.22DNA-directed RNA polymerase I n=2 Tax=Suillus TaxI... [more]
A0A7R9QPU4_9ACAR2.760e-1178.79Hypothetical protein n=1 Tax=Oppiella nova TaxID=3... [more]
A0A197K819_9FUNG2.770e-1178.13DNA-directed RNA polymerase I n=1 Tax=Linnemannia ... [more]
E2BHJ3_HARSA3.390e-1175.00DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7K9HX18_9AVES3.580e-1175.00RPAB4 protein (Fragment) n=3 Tax=Neognathae TaxID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 39..45
NoneNo IPR availableGENE3D2.20.28.30coord: 5..45
e-value: 4.6E-17
score: 63.1
NoneNo IPR availablePRODOMPD012151coord: 13..43
e-value: 7.0E-8
score: 129.0
IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4SMARTSM00659rpolcxc3coord: 7..43
e-value: 1.4E-6
score: 37.9
IPR006591RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4PFAMPF03604DNA_RNApol_7kDcoord: 12..40
e-value: 1.1E-14
score: 53.8
IPR039747DNA-directed RNA polymerases I, II, and III subunit RPABC4PANTHERPTHR12056DNA-DIRECTED RNA POLYMERASES I, II, AND IIIcoord: 12..44
IPR029040RNA polymerase subunit RPABC4/transcription elongation factor Spt4SUPERFAMILY63393RNA polymerase subunitscoord: 12..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1351contigL-elsbetiae_contig1351:22029..22166 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1351.2690.1mRNA_L-elsbetiae_contig1351.2690.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1351 22029..22166 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1351.2690.1 ID=prot_L-elsbetiae_contig1351.2690.1|Name=mRNA_L-elsbetiae_contig1351.2690.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=46bp
PPLFVHASRAGADCGSDNLIKAKDPIQCRQCGYRIMYKKRTKRCE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006591RNAP_P/RPABC4
IPR039747RPABC4
IPR029040RPABC4/Spt4