prot_L-elsbetiae_contig13355.2594.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig13355.2594.1
Unique Name	prot_L-elsbetiae_contig13355.2594.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	339

Homology

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BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Match: D7FTY3_ECTSI (S5 DRBM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY3_ECTSI)

HSP 1 Score: 471 bits (1212), Expect = 4.450e-164
Identity = 255/330 (77.27%), Postives = 282/330 (85.45%), Query Frame = 0

Query:   17 RSAPPLRQAAS-LHSSAVLMERGGKHGDSRGEGAGGKG-----ASSDGPKTAPPRSISMTQNDKPDPVDLADLIMSGTSYKEAVRGTEFDDLDPETAQEYDESIRRLEALQQNKLEEYLEEQGNTDLLDKFRTVQGKPKSSEEVGAPSPPKKKK--TVEMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVTVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAARFS 338
            R A   RQAA+ LHSS +L++RG K G+S               S+D  K A  RS+SMT  DKPD VDLADLIMSGTSY+EAV+GTEFD LD ET++E++ES RRL AL++N+LEEYLEE G TDLLDK R + G+P++SE+   P+PPKKKK  TVEMAQG+WAEIL+HTDRVTKTVKGGMEIQYRALVTVGNL+GVGGFAIGKAD+PAVAITEASRKAKLL NLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACK IGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMA RF+
Sbjct:   41 RPAQHHRQAAAALHSSTMLLDRGDKRGESHNSSVXXXXXXXXXGSADESKPASVRSVSMTDKDKPDVVDLADLIMSGTSYEEAVKGTEFDALDKETSKEFEESTRRLTALRENRLEEYLEETGETDLLDKVRAIYGEPETSEQTDGPAPPKKKKKKTVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 370

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BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Match: D7FTY0_ECTSI (S5 DRBM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTY0_ECTSI)

HSP 1 Score: 449 bits (1155), Expect = 1.840e-156
Identity = 241/309 (77.99%), Postives = 267/309 (86.41%), Query Frame = 0

Query:   33 VLMERGGKHGDSRGEGAGGKGA---SSDGPKTAPPRSISMTQNDKPDPVDLADLIMSGTSYKEAVRGTEFDDLDPETAQEYDESIRRLEALQQNKLEEYLEEQGNTDLLDKFRTVQGKPKSSEEVGAPSPPKKKKTVEMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVTVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAARFS 338
            +L++RG K G+S     GGK     S+D  K A  RS+SMT  DKPD VDLADLIMSGTSY+EAV+GTEFD LD ET++E++ES RRL AL++N+LEEYLEE G TDLLDK R + G+P++SE+   P+PPKKKKTVEMAQG+WAEIL+HTDRVTKTVKGGMEIQYRALVTVGNL+GVGGFAIGKAD+PAVAITEASRKAKLL NLVYVERYKQASLCQDLVGKHNGSKVYIWSR       AGKLSRDILYNMGITDGACK IGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMA RF+
Sbjct:    1 MLLDRGDKRGESHNVDNGGKEGDTGSADESKPASVRSVSMTDKDKPDVVDLADLIMSGTSYEEAVKGTEFDALDKETSKEFEESTRRLTALRENRLEEYLEETGETDLLDKVRAIYGEPETSEQTDGPAPPKKKKTVEMAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSR-------AGKLSRDILYNMGITDGACKIIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREMAGRFA 302

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BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Match: A0A6H5LA05_9PHAE (S5 DRBM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA05_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 1.470e-75
Identity = 117/126 (92.86%), Postives = 123/126 (97.62%), Query Frame = 0

Query:  168 MAQGKWAEILIHTDRVTKTVKGGMEIQYRALVTVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTI 293
            MAQG+WAEIL+HTDRVTKTVKGGMEIQYRALVTVGNL+GVGGFAIGKAD+PAVAITEASRKAKLL NLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGA  ++
Sbjct:    1 MAQGQWAEILVHTDRVTKTVKGGMEIQYRALVTVGNLHGVGGFAIGKADTPAVAITEASRKAKLLHNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGAAASL 126

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BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Match: A0A1Z5K7E2_FISSO (Small subunit ribosomal protein S5 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7E2_FISSO)

HSP 1 Score: 139 bits (351), Expect = 1.980e-34
Identity = 78/167 (46.71%), Postives = 101/167 (60.48%), Query Frame = 0

Query:  167 EMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVTVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQREM 333
            ++A G+W+E+L+  DR TK  +GG    YRALV  GNLNG GGF IGK+  P  A+  ASRK K   N+ +V+RY+   L  DL GK N  KVY+  R    G+R   L R+IL   GIT+   K+ G RN Y++  A F AL  H  IE IA  RGKR++S+ R M
Sbjct:  234 QLAHGEWSEMLVTVDRTTKLWRGGRLESYRALVIGGNLNGCGGFGIGKSKDPINAVAVASRKCKR--NIFFVDRYQGNGLTSDLAGKQNSCKVYL--RSTDDGLRGNHLIREILKRFGITNCVAKSHGNRNPYNVTRATFKALMTHESIEDIALKRGKRLVSIDRAM 396

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BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Match: A0A4D9DA75_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA75_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.130e-32
Identity = 66/162 (40.74%), Postives = 105/162 (64.81%), Query Frame = 0

Query:  170 QGKWAEILIHTDRVTKTVKGGMEIQYRALVTVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQR 331
            +GKW ++L+ TD   K +KGG  + YRALV VGNL G GG+ +GK  +   A   A R AK   NL++++ Y+   +  DL GKHN  ++YI +  P    + G++  D+L  MG+  G  ++IGRRN YS++ A+F A++KH G+E+++R RG+R++S+ +
Sbjct:  730 EGKWVKMLVDTDTTQKIIKGGHILSYRALVLVGNLKGCGGWGVGKGATLEEAQIRAYRAAK--KNLIHIDLYRNRCITTDLYGKHNNCRIYIQAGQPNRPHKEGRMINDMLRIMGVECGEARSIGRRNPYSVVRALFHAISKHEGVEALSRKRGRRLISVSK 889

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BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Match: W7U5Y7_9STRA (30s ribosomal protein s5 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U5Y7_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.140e-32
Identity = 66/162 (40.74%), Postives = 105/162 (64.81%), Query Frame = 0

Query:  170 QGKWAEILIHTDRVTKTVKGGMEIQYRALVTVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSLQR 331
            +GKW ++L+ TD   K +KGG  + YRALV VGNL G GG+ +GK  +   A   A R AK   NL++++ Y+   +  DL GKHN  ++YI +  P    + G++  D+L  MG+  G  ++IGRRN YS++ A+F A++KH G+E+++R RG+R++S+ +
Sbjct:  751 EGKWVKMLVDTDTTQKIIKGGHILSYRALVLVGNLKGCGGWGVGKGATLEEAQIRAYRAAK--KNLIHIDLYRNRCITTDLYGKHNNCRIYIQAGQPNRPHKEGRMINDMLRIMGVECGEARSIGRRNPYSVVRALFHAISKHEGVEALSRKRGRRLISVSK 910

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BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Match: A0A7G8ZJN6_9PROT (30S ribosomal protein S5 n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A7G8ZJN6_9PROT)

HSP 1 Score: 103 bits (257), Expect = 8.440e-23
Identity = 62/160 (38.75%), Postives = 88/160 (55.00%), Query Frame = 0

Query:  170 QGKWAEILIHTDRVTKTVKGGMEIQYRALVTVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSL 329
            Q +  + L+H +RV KTVKGG   Q+ ALV VG+  G  GF  GKA     AI +A+ +AK    +V +   +  +L  D  G+H   KV + + PPG+G+ AG   R +L  +G+ D   K+ G  N Y+MI A FDAL   +   SIA  RG ++  L
Sbjct:   21 QDEIVDKLVHINRVAKTVKGGRNFQFAALVVVGDQKGRVGFGQGKAREVPEAIRKATEEAK--KTMVRIPLREGRTLHHDSPGRHGAGKVILRAAPPGTGVIAGGPMRAVLETLGVQDVVAKSTGTSNPYNMIRATFDALKHQKSPRSIAAKRGMKVADL 178

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BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Match: A0A420WMI4_9PROT (30S ribosomal protein S5 n=4 Tax=Robiginitomaculaceae TaxID=2800062 RepID=A0A420WMI4_9PROT)

HSP 1 Score: 101 bits (251), Expect = 5.440e-22
Identity = 60/169 (35.50%), Postives = 94/169 (55.62%), Query Frame = 0

Query:  161 KKKKTVEMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVTVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRILSL 329
            ++ K  E    ++ + L+H +RV KTVKGG  + + ALV VG+  G  GF  GKA     AI +A+ +AK    ++ V   +  +L  D+ G+H   K+ + S PPG+G+ AG   R +L  +G+ D   K++G  N Y+M+ A FDAL +      IA  RGK++  +
Sbjct:    7 RRNKRDEEQDNEFIDRLVHINRVAKTVKGGRNMSFAALVIVGDEKGRVGFGKGKAREVPEAIRKATEEAK--KTMIRVPLREGRTLHHDVRGRHGAGKIVMRSAPPGTGVIAGGPMRAVLECLGVQDVVGKSVGTSNPYNMVRATFDALKRMESPRMIANKRGKKVAEI 173

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BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Match: A0A848V710_9PROT (30S ribosomal protein S5 n=1 Tax=Hellea sp. TaxID=2715692 RepID=A0A848V710_9PROT)

HSP 1 Score: 100 bits (250), Expect = 7.570e-22
Identity = 58/150 (38.67%), Postives = 87/150 (58.00%), Query Frame = 0

Query:  177 LIHTDRVTKTVKGGMEIQYRALVTVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRI 326
            L+H +RV KTVKGG  + + ALV VG+  G  GF  GKA     AI +A+ +AK    ++ V   +  +L  DL G+H   K+ + + PPG+G+ AG   R +L  +G+ D   K++G  N Y+M+ A FDAL +     +IA  RGK++
Sbjct:   21 LVHINRVAKTVKGGRNMSFAALVVVGDEKGRVGFGKGKAREVPEAIRKATEEAKR--TMIRVPLREGRTLHHDLKGRHGAGKIVMRAAPPGTGVIAGGPMRAVLECLGVQDVVGKSVGTSNPYNMVRATFDALKRAESPRTIAAKRGKKV 168

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BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Match: RS5_MARMM (30S ribosomal protein S5 n=8 Tax=Maricaulis TaxID=74317 RepID=RS5_MARMM)

HSP 1 Score: 100 bits (249), Expect = 1.410e-21
Identity = 60/150 (40.00%), Postives = 84/150 (56.00%), Query Frame = 0

Query:  177 LIHTDRVTKTVKGGMEIQYRALVTVGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDLVGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTIGRRNKYSMIYAMFDALAKHRGIESIARGRGKRI 326
            L+H +RV KTVKGG   Q+ ALV VG+  G  GF  GKA     AI +A+ +AK   N++ V   +  +L  D  G+H   KV + + PPG+G+ AG   R +L  +GI D   K++G  N Y+MI A  DAL       S+A  RG ++
Sbjct:   35 LVHINRVAKTVKGGRNFQFAALVVVGDTKGRVGFGQGKAREVPEAIRKATDEAK--KNMIRVPLREGRTLHHDGKGRHGAGKVVLRAAPPGTGVIAGGPMRAVLETLGIQDVVAKSVGTSNPYNMIRATMDALKLQSSPRSVAAKRGLKV 182

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig13355.2594.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FTY3_ECTSI	4.450e-164	77.27	S5 DRBM domain-containing protein n=1 Tax=Ectocarp...	[more]
D7FTY0_ECTSI	1.840e-156	77.99	S5 DRBM domain-containing protein n=2 Tax=Ectocarp...	[more]
A0A6H5LA05_9PHAE	1.470e-75	92.86	S5 DRBM domain-containing protein n=1 Tax=Ectocarp...	[more]
A0A1Z5K7E2_FISSO	1.980e-34	46.71	Small subunit ribosomal protein S5 n=2 Tax=Fistuli...	[more]
A0A4D9DA75_9STRA	1.130e-32	40.74	Uncharacterized protein n=1 Tax=Nannochloropsis sa...	[more]
W7U5Y7_9STRA	1.140e-32	40.74	30s ribosomal protein s5 n=1 Tax=Nannochloropsis g...	[more]
A0A7G8ZJN6_9PROT	8.440e-23	38.75	30S ribosomal protein S5 n=3 Tax=Alphaproteobacter...	[more]
A0A420WMI4_9PROT	5.440e-22	35.50	30S ribosomal protein S5 n=4 Tax=Robiginitomaculac...	[more]
A0A848V710_9PROT	7.570e-22	38.67	30S ribosomal protein S5 n=1 Tax=Hellea sp. TaxID=...	[more]
RS5_MARMM	1.410e-21	40.00	30S ribosomal protein S5 n=8 Tax=Maricaulis TaxID=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 107..127
None	No IPR available	GENE3D	3.30.160.20		coord: 164..233 e-value: 1.5E-16 score: 62.1
None	No IPR available	PANTHER	PTHR13718:SF94	30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC	coord: 71..323
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 171..240
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 241..331 e-value: 2.0E-17 score: 64.5
IPR013810	Ribosomal protein S5, N-terminal	PFAM	PF00333	Ribosomal_S5	coord: 174..239 e-value: 3.2E-19 score: 68.7
IPR013810	Ribosomal protein S5, N-terminal	PROSITE	PS50881	S5_DSRBD	coord: 173..236 score: 14.413
IPR005324	Ribosomal protein S5, C-terminal	PFAM	PF03719	Ribosomal_S5_C	coord: 252..322 e-value: 5.3E-19 score: 67.4
IPR000851	Ribosomal protein S5	PANTHER	PTHR13718	RIBOSOMAL S SUBUNIT	coord: 71..323
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 245..324

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig13355	contig	L-elsbetiae_contig13355:963..4662 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig13355.2594.1	mRNA_L-elsbetiae_contig13355.2594.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig13355 258..5046 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig13355.2594.1 ID=prot_L-elsbetiae_contig13355.2594.1|Name=mRNA_L-elsbetiae_contig13355.2594.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=339bp
MYMPHVCVCDDRCRSTRSAPPLRQAASLHSSAVLMERGGKHGDSRGEGAG
GKGASSDGPKTAPPRSISMTQNDKPDPVDLADLIMSGTSYKEAVRGTEFD
DLDPETAQEYDESIRRLEALQQNKLEEYLEEQGNTDLLDKFRTVQGKPKS
SEEVGAPSPPKKKKTVEMAQGKWAEILIHTDRVTKTVKGGMEIQYRALVT
VGNLNGVGGFAIGKADSPAVAITEASRKAKLLPNLVYVERYKQASLCQDL
VGKHNGSKVYIWSRPPGSGMRAGKLSRDILYNMGITDGACKTIGRRNKYS
MIYAMFDALAKHRGIESIARGRGKRILSLQREMAARFS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR013810	Ribosomal_S5_N
IPR005324	Ribosomal_S5_C
IPR000851	Ribosomal_S5
IPR020568	Ribosomal_S5_D2-typ_fold