prot_L-elsbetiae_contig13204.2504.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig13204.2504.1
Unique Name	prot_L-elsbetiae_contig13204.2504.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	92

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig13204.2504.1 vs. uniprot
Match: D7FWU7_ECTSI (EF-hand, calcium binding motif n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU7_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.270e-45
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = 0

Query:    1 QARVKAAAEKVPVRTMKENEQLLREKILGSIGGGPFQLLRSFRKMHRGRGTVVDLNDFREAVTTFSLGLGEPEVVAFFKGFDADGSGGIDFE 92
            QA+VKAA+E+VP RTM ENEQLLR+KILGSIGGGPFQLLR+FRKMHRGRGTVVDLNDFREAV TFSLGLGEPEV AFFKGFDADGSGGIDFE
Sbjct:  244 QAKVKAASERVPERTMAENEQLLRQKILGSIGGGPFQLLRAFRKMHRGRGTVVDLNDFREAVKTFSLGLGEPEVEAFFKGFDADGSGGIDFE 335

[Close]

BLAST of mRNA_L-elsbetiae_contig13204.2504.1 vs. uniprot
Match: A0A6H5KCV0_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV0_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 5.880e-9
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 0

Query:   52 VVDLNDFREAVTTFSLGLGEPEVVAFFKGFDADGSGGIDF 91
            V+D   FRE V   +LGL EPE++ FF+ FDADGSGGIDF
Sbjct:    2 VIDFKGFREGVKKLNLGLTEPEILDFFRSFDADGSGGIDF 41

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig13204.2504.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig13204.2504.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FWU7_ECTSI	1.270e-45	90.22	EF-hand, calcium binding motif n=1 Tax=Ectocarpus ...	[more]
A0A6H5KCV0_9PHAE	5.880e-9	62.50	EF-hand domain-containing protein n=1 Tax=Ectocarp...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.238.10		coord: 3..92 e-value: 1.0E-7 score: 33.6
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 69..92 score: 9.911
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 37..92

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig13204	contig	L-elsbetiae_contig13204:970..3375 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig13204.2504.1	mRNA_L-elsbetiae_contig13204.2504.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig13204 970..3375 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig13204.2504.1 ID=prot_L-elsbetiae_contig13204.2504.1|Name=mRNA_L-elsbetiae_contig13204.2504.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
QARVKAAAEKVPVRTMKENEQLLREKILGSIGGGPFQLLRSFRKMHRGRG
TVVDLNDFREAVTTFSLGLGEPEVVAFFKGFDADGSGGIDFE

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair