prot_L-elsbetiae_contig13187.2489.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig13187.2489.1
Unique Nameprot_L-elsbetiae_contig13187.2489.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length393
Homology
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BLAST of mRNA_L-elsbetiae_contig13187.2489.1 vs. uniprot
Match: D7FT35_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT35_ECTSI)

HSP 1 Score: 298 bits (764), Expect = 6.910e-96
Identity = 246/343 (71.72%), Postives = 264/343 (76.97%), Query Frame = 0 
Query:   53 MMEALKTPSDIQTLTFHNAGLTEASMAVLVDGLQHTSVRSLGLDYNTPLPLASLSSSSFMRPKEIKRGAQAAEDLANEAAFD---RNFAGLVREGSKLKALSLRGNGIRDFEAAALAEAIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLAPEQEKRAAADAKIAAQNKIAQDALKKKKDAKVETRLPLSAVVVQTGGDGSGKAIAGGSKSLAALNLSENRELGEGGALVGLLSRIVKARKEEAEEAGXXXXXXXXXXXVVLQELSLARCQGYAEQEEADGEDRDGMAVGDQAGALAAMSFALRPTKVVV 392
            MMEALK  SD+ T+ FHNAGLT AS+ VLV+GL HT+VR   LDYNT LP+   SSS   RP        A E+      F    RNFAGLV EGSKLKALSLRGN + D EA ALAEAIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVL  EQEKRAAAD KIAAQNK+A DA+KKKKDAKVETRLPLSAV V+TG DG  +A+AGGS+SLAALNL++NR+LGEGGAL GLLSRIV ARKEEA EAG           VVLQEL L RCQGYAE  EA GED           A+AAMSFALRPTKVVV
Sbjct:    1 MMEALKRSSDVDTVDFHNAGLTGASIDVLVEGLPHTTVRCFALDYNT-LPVVLSSSSPPTRPPPSGPTEPALEEAPATEGFSSLTRNFAGLVSEGSKLKALSLRGNALGDAEAIALAEAIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLLAGGYEVLPAEQEKRAAADVKIAAQNKLAADAMKKKKDAKVETRLPLSAVTVRTGEDGRSRAVAGGSRSLAALNLADNRDLGEGGALAGLLSRIVNARKEEAGEAGEGAGFGAGGGSVVLQELHLTRCQGYAE--EAGGEDDT---------AIAAMSFALRPTKVVV 331
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13187.2489.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT35_ECTSI6.910e-9671.72Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 144..171
e-value: 0.34
score: 20.0
coord: 172..199
e-value: 0.93
score: 17.4
coord: 200..227
e-value: 8.5
score: 10.6
NoneNo IPR availablePANTHERPTHR46984FAMILY NOT NAMEDcoord: 134..245
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 40..309
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 177..194
e-value: 0.007
score: 16.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 33..264
e-value: 6.7E-24
score: 86.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13187contigL-elsbetiae_contig13187:2697..4790 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13187.2489.1mRNA_L-elsbetiae_contig13187.2489.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig13187 2697..4790 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig13187.2489.1 ID=prot_L-elsbetiae_contig13187.2489.1|Name=mRNA_L-elsbetiae_contig13187.2489.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=393bp
ISRVFEIPAHPCLASRRAKGTTEDGKPAPSTAKASSTVQLRNFAVDLATL
HLMMEALKTPSDIQTLTFHNAGLTEASMAVLVDGLQHTSVRSLGLDYNTP
LPLASLSSSSFMRPKEIKRGAQAAEDLANEAAFDRNFAGLVREGSKLKAL
SLRGNGIRDFEAAALAEAIEENAVLCSLNLFDNKITDVGAAAFAEMLRLN
TVLRGLSLARNSLTPASAEAFGLLLAGGYEVLAPEQEKRAAADAKIAAQN
KIAQDALKKKKDAKVETRLPLSAVVVQTGGDGSGKAIAGGSKSLAALNLS
ENRELGEGGALVGLLSRIVKARKEEAEEAGAGAGFGAGAGAVVLQELSLA
RCQGYAEQEEADGEDRDGMAVGDQAGALAAMSFALRPTKVVV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf