prot_L-elsbetiae_contig13157.2467.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig13157.2467.1
Unique Nameprot_L-elsbetiae_contig13157.2467.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length171
Homology
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BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Match: A0A6H5KSG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG1_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.260e-14
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 0 
Query:   16 KGHSARVHHAEFSPDGALVASASKDRTVRLWTPSARGGSAVL 57
            KGHSA VHHAEFSP G+LVASASKDRTVRLWTPSARGGS+VL
Sbjct:    8 KGHSATVHHAEFSPKGSLVASASKDRTVRLWTPSARGGSSVL 49
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BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Match: A0A7L3WV41_9GRUI (POC1B protein (Fragment) n=1 Tax=Atlantisia rogersi TaxID=2478892 RepID=A0A7L3WV41_9GRUI)

HSP 1 Score: 59.7 bits (143), Expect = 1.450e-7
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0 
Query:   10 TQALRFKGHSARVHHAEFSPDGALVASASKDRTVRLWTPSARGGSAVL 57
            ++A RF GH+A V   +FSPDG L+ASAS+DRTVRLW P   G S+VL
Sbjct:   18 SRAYRFVGHAAAVTGVQFSPDGQLLASASQDRTVRLWIPCIHGESSVL 65
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BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Match: A0A8B7IXY5_9AVES (POC1 centriolar protein homolog B isoform X2 n=1 Tax=Apteryx mantelli mantelli TaxID=202946 RepID=A0A8B7IXY5_9AVES)

HSP 1 Score: 59.7 bits (143), Expect = 2.330e-7
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 0 
Query:    9 KTQALRFKGHSARVHHAEFSPDGALVASASKDRTVRLWTPSARGGSAVL 57
            +++A RF GH   V   +FSPDG LVASAS+DRTVRLW P   G S+VL
Sbjct:    8 QSRAFRFVGHKEAVTSVQFSPDGQLVASASQDRTVRLWIPCIHGESSVL 56
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BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Match: UPI000907073D (POC1 centriolar protein homolog B isoform X3 n=2 Tax=Crocodylia TaxID=1294634 RepID=UPI000907073D)

HSP 1 Score: 59.3 bits (142), Expect = 3.070e-7
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 0 
Query:    9 KTQALRFKGHSARVHHAEFSPDGALVASASKDRTVRLWTPSARGGSAVL 57
            +++A RF GH   V+  +FSPDG L+ASAS+DRTVRLW P   G S+VL
Sbjct:    8 QSRAFRFVGHVEAVNSVQFSPDGQLLASASQDRTVRLWVPCIHGESSVL 56
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BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Match: UPI000907020F (POC1 centriolar protein homolog B isoform X2 n=5 Tax=Crocodylia TaxID=1294634 RepID=UPI000907020F)

HSP 1 Score: 59.3 bits (142), Expect = 3.110e-7
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 0 
Query:    9 KTQALRFKGHSARVHHAEFSPDGALVASASKDRTVRLWTPSARGGSAVL 57
            +++A RF GH   V+  +FSPDG L+ASAS+DRTVRLW P   G S+VL
Sbjct:    8 QSRAFRFVGHVEAVNSVQFSPDGQLLASASQDRTVRLWVPCIHGESSVL 56
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BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Match: A0A7M4E3B9_CROPO (POC1 centriolar protein B n=8 Tax=Crocodylia TaxID=1294634 RepID=A0A7M4E3B9_CROPO)

HSP 1 Score: 59.3 bits (142), Expect = 3.250e-7
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 0 
Query:    9 KTQALRFKGHSARVHHAEFSPDGALVASASKDRTVRLWTPSARGGSAVL 57
            +++A RF GH   V+  +FSPDG L+ASAS+DRTVRLW P   G S+VL
Sbjct:    8 QSRAFRFVGHVEAVNSVQFSPDGQLLASASQDRTVRLWVPCIHGESSVL 56
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BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Match: A0A091NUI8_APAVI (POC1 centriolar protein B (Fragment) n=1 Tax=Apaloderma vittatum TaxID=57397 RepID=A0A091NUI8_APAVI)

HSP 1 Score: 58.9 bits (141), Expect = 4.080e-7
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 0 
Query:    9 KTQALRFKGHSARVHHAEFSPDGALVASASKDRTVRLWTPSARGGSAVL 57
            K +A +F GH+A V   +FSP+G L+ASAS+DRTVRLW P   G S+VL
Sbjct:   14 KCKAYKFAGHAAAVTSVQFSPEGQLLASASQDRTVRLWIPCIHGESSVL 62
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BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Match: UPI00051E1614 (POC1 centriolar protein homolog B isoform X1 n=2 Tax=Struthio camelus australis TaxID=441894 RepID=UPI00051E1614)

HSP 1 Score: 58.9 bits (141), Expect = 4.410e-7
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 0 
Query:    9 KTQALRFKGHSARVHHAEFSPDGALVASASKDRTVRLWTPSARGGSAVL 57
            +++A RF GH   V   +FSPDG LVASAS+DRTVRLW P   G S+VL
Sbjct:    8 QSRAFRFVGHVEAVTSVQFSPDGQLVASASQDRTVRLWIPCIHGESSVL 56
[Close]
BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Match: A0A8J4UC92_CLAMG (POC1 centriolar protein B (Fragment) n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4UC92_CLAMG)

HSP 1 Score: 58.5 bits (140), Expect = 5.830e-7
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 0 
Query:    9 KTQALRFKGHSARVHHAEFSPDGALVASASKDRTVRLWTPSARGGSAVL 57
            K++A RF GH   V    FSP G L+AS S+DRTVRLWTPS +G S VL
Sbjct:    8 KSRAFRFIGHQDIVTAVHFSPSGELLASGSRDRTVRLWTPSIKGESTVL 56
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BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Match: A0A7K8XTC0_9PICI (POC1B protein (Fragment) n=2 Tax=Piciformes TaxID=9219 RepID=A0A7K8XTC0_9PICI)

HSP 1 Score: 58.5 bits (140), Expect = 5.970e-7
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 0 
Query:    9 KTQALRFKGHSARVHHAEFSPDGALVASASKDRTVRLWTPSARGGSAVL 57
            +++A RF GH   V   +FSPDG L+ASAS+DRTVRLW P   G S+VL
Sbjct:   17 QSRAYRFVGHEEAVTSVQFSPDGQLLASASRDRTVRLWIPCIHGESSVL 65
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13157.2467.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSG1_9PHAE2.260e-1490.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7L3WV41_9GRUI1.450e-760.42POC1B protein (Fragment) n=1 Tax=Atlantisia rogers... [more]
A0A8B7IXY5_9AVES2.330e-759.18POC1 centriolar protein homolog B isoform X2 n=1 T... [more]
UPI000907073D3.070e-757.14POC1 centriolar protein homolog B isoform X3 n=2 T... [more]
UPI000907020F3.110e-757.14POC1 centriolar protein homolog B isoform X2 n=5 T... [more]
A0A7M4E3B9_CROPO3.250e-757.14POC1 centriolar protein B n=8 Tax=Crocodylia TaxID... [more]
A0A091NUI8_APAVI4.080e-757.14POC1 centriolar protein B (Fragment) n=1 Tax=Apalo... [more]
UPI00051E16144.410e-759.18POC1 centriolar protein homolog B isoform X1 n=2 T... [more]
A0A8J4UC92_CLAMG5.830e-759.18POC1 centriolar protein B (Fragment) n=1 Tax=Clari... [more]
A0A7K8XTC0_9PICI5.970e-757.14POC1B protein (Fragment) n=2 Tax=Piciformes TaxID=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 76..90
score: 39.19
coord: 118..132
score: 35.35
coord: 34..48
score: 36.0
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 92..131
e-value: 1.9E-10
score: 50.7
coord: 134..171
e-value: 0.022
score: 23.9
coord: 8..47
e-value: 4.2E-7
score: 39.6
coord: 50..89
e-value: 1.1E-6
score: 38.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 56..88
e-value: 2.1E-7
score: 31.5
coord: 136..171
e-value: 2.2E-5
score: 25.1
coord: 96..131
e-value: 8.2E-10
score: 39.1
coord: 15..46
e-value: 2.6E-8
score: 34.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 57..98
score: 14.786
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 99..140
score: 16.591
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 141..171
score: 9.606
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 15..46
score: 14.92
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 10..95
e-value: 2.7E-26
score: 94.6
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 96..171
e-value: 3.9E-27
score: 97.2
NoneNo IPR availablePANTHERPTHR44019FAMILY NOT NAMEDcoord: 6..171
NoneNo IPR availablePANTHERPTHR44019:SF1POC1 CENTRIOLAR PROTEIN HOMOLOG Bcoord: 6..171
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 9..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 13..171
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..8
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..12
score: 0.671
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 118..132
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 15..171
score: 42.712
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 11..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13157contigL-elsbetiae_contig13157:1050..4484 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13157.2467.1mRNA_L-elsbetiae_contig13157.2467.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig13157 1050..4484 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig13157.2467.1 ID=prot_L-elsbetiae_contig13157.2467.1|Name=mRNA_L-elsbetiae_contig13157.2467.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=171bp
LLLLLLLCKTQALRFKGHSARVHHAEFSPDGALVASASKDRTVRLWTPSA
RGGSAVLKGHMGGVRHASFSRNGRLLITASEDKTVKIWALPSQRFVCTLN
GHNNWVRCATFSPDSRLATSCGDDKTVRLWDVQSQECLRTFFDHDGSVGQ
ARFHPDGTCVAACSADRTIKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf