prot_L-elsbetiae_contig1311.2448.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig1311.2448.1
Unique Name	prot_L-elsbetiae_contig1311.2448.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	286

Homology

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BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Match: D8LNL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL8_ECTSI)

HSP 1 Score: 379 bits (972), Expect = 1.460e-125
Identity = 200/232 (86.21%), Postives = 204/232 (87.93%), Query Frame = 0

Query:   52 MVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNPDGTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVVKFADVKKTHTAKGWLVP-DGRGVSPLGLNGGGMRHGG--SVGGYWQATGAPGXXXXXGLRDVYGKGQGREVYPDYGRG-GYPY 279
            MVIRDRQTDAHRGCAFLTYQ+REAGERAV+KFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGR  VAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNPDGTPKGCAFVKFSTRSAAIAAIEALHEKCTM+GATRALVVKFADVKK  TAKGW+VP D RG SPLG NG    HGG  SVGGYWQATGAPG       RDVY KG  REVYPDY    GYPY
Sbjct:    1 MVIRDRQTDAHRGCAFLTYQTREAGERAVDKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGR--VAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNPDGTPKGCAFVKFSTRSAAIAAIEALHEKCTMDGATRALVVKFADVKKAQTAKGWMVPPDARGASPLGYNG--RYHGGGTSVGGYWQATGAPGG------RDVYSKG--REVYPDYANHRGYPY 220

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BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Match: A0A7S3UU89_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU89_HETAK)

HSP 1 Score: 203 bits (516), Expect = 3.550e-61
Identity = 103/186 (55.38%), Postives = 131/186 (70.43%), Query Frame = 0

Query:   22 LKLFVGQVPKDMDEDQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNPDGTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVVKFADVKK 207
            +KLFVGQ+P+++DE  LRP+FE  GP+  +MVIRD+QT AHR CAFLTY  RE+ E+A+ + H + KLPNA NP+QVRPA+ Q                 +RENKLFVGM+P  A +  L  VF+ FG + E++ +R PDG  KGCAFVKF+ R AA+AAI ALHE+ TMEG  RALVVKFAD K+
Sbjct:   40 IKLFVGQIPRELDEAALRPVFEAYGPVFDLMVIRDKQTGAHRRCAFLTYCHRESAEKAIAELHGQKKLPNAQNPLQVRPAEGQA----------------ERENKLFVGMVPRAAAEGDLRAVFAPFGALREVHVIRQPDGANKGCAFVKFAERRAALAAIAALHERHTMEGGPRALVVKFADNKR 209

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BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Match: A0A836CFQ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFQ8_9STRA)

HSP 1 Score: 212 bits (540), Expect = 7.460e-60
Identity = 111/187 (59.36%), Postives = 136/187 (72.73%), Query Frame = 0

Query:   21 PLKLFVGQVPKDMDEDQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNPDGTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVVKFADVKK 207
            PLKLFVGQVPK MDE QLRP+FE+AGPIAH+MVIRDRQT  HRGC F+TYQ+R A E A+E F+N VKLPNA NP+Q+RPADS  G           +A   +ENKLFVGM+P    +  L ++F  +G+ITEIY +R+ DGT KGCAFVK+    +A AAI+ALHE   +EG +R LVVK AD K+
Sbjct:   31 PLKLFVGQVPKHMDEAQLRPIFEKAGPIAHLMVIRDRQTRMHRGCMFITYQTRAAAEAAIEMFNNNVKLPNAQNPLQMRPADSHAG-----------MASAVKENKLFVGMMPARWGEDELRQLFQPYGKITEIYVIRDLDGTSKGCAFVKYEELESANAAIKALHE-AILEGGSRPLVVKLADKKQ 205

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BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Match: A0A7R9U3N7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3N7_9STRA)

HSP 1 Score: 208 bits (529), Expect = 3.140e-59
Identity = 100/194 (51.55%), Postives = 139/194 (71.65%), Query Frame = 0

Query:   14 EEGTGGTPLKLFVGQVPKDMDEDQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNPDGTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVVKFADVKK 207
            ++ +G   +KLFVGQ+PKD++E+QLRP+FE+ G I  + VIRDR T AHRGCAFLTY+++E+G+ A+ + HN++ LP AHNP+QV+PA  +                 +RENKLFVGM+P  A D  ++ VF RFG+I EIY +R+ DG+ +GCAF+KF  RS+A+ AI  L++K TMEGA R L+VKFAD K+
Sbjct:  184 DDDSGMGAIKLFVGQIPKDIEEEQLRPIFEEFGEIFELAVIRDRHTGAHRGCAFLTYKTKESGDMAIRELHNRLVLPKAHNPLQVKPAAGRA----------------ERENKLFVGMMPRTATDADVSNVFGRFGDIREIYIIRDQDGSSRGCAFLKFKARSSALTAIRELNDKYTMEGAPRPLIVKFADNKR 361

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BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Match: A0A2P4XGI8_9STRA (CUG-BP-and ETR-3-like factor (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XGI8_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.140e-54
Identity = 98/214 (45.79%), Postives = 137/214 (64.02%), Query Frame = 0

Query:   21 PLKLFVGQVPKDMDEDQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNP-DGTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVVKFADVKKTHTAKG----------WLVPDGRGVS 223
            P+KLFVGQVP+ M+ED LRP+ E  GP+  +++IRD+ T AHRGCAF +Y +R+A E+AV++ HNKV LP + NP+QVRPA+ Q G                +E+KLF+GM+P  AD+  + EVF  FG I E+Y +R+P  G  KGCAF+KF  RS+A+AAIE ++   TM+  T  LVVKFAD ++    +           W +P G G++
Sbjct:   28 PVKLFVGQVPRTMEEDDLRPVLEVFGPLEDLVIIRDKITGAHRGCAFASYFTRDAAEKAVQELHNKVTLPQSINPLQVRPAEGQAG--------------ASQEHKLFIGMIPKTADEAAIREVFELFGTIEEVYILRHPATGQSKGCAFLKFKERSSALAAIEDVNGNVTMDRGTSPLVVKFADSRRQRLQRARNLAAAANAYWPLPPGAGLA 227

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BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Match: A0A5D6YER1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YER1_9STRA)

HSP 1 Score: 192 bits (488), Expect = 4.970e-54
Identity = 97/191 (50.79%), Postives = 130/191 (68.06%), Query Frame = 0

Query:   18 GGTPLKLFVGQVPKDMDEDQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNP-DGTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVVKFADVKK 207
            GG P+KLFVGQVP+ M+ED LRP+ E  GPI  +++IRD+ T AHRGCAF ++ SR+A ERAV + HNKV LP + NP+QVRPA+ Q G                +E+KLF+GM+P  AD+  + EVF  FG I E+Y +R+P  G  KGCAF+KF  R++A+AAIE ++   TM+  T  LVVKFAD ++
Sbjct:   51 GGGPVKLFVGQVPRTMEEDDLRPVLEAFGPIEDLVIIRDKLTGAHRGCAFASFYSRDAAERAVAELHNKVTLPQSINPLQVRPAEGQAG--------------ASQEHKLFIGMIPKSADEAAIREVFELFGAIEEVYILRHPATGQSKGCAFLKFKDRNSALAAIEDVNGNVTMDRGTSPLVVKFADSRR 227

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BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Match: H3GY92_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GY92_PHYRM)

HSP 1 Score: 191 bits (485), Expect = 8.820e-54
Identity = 102/233 (43.78%), Postives = 145/233 (62.23%), Query Frame = 0

Query:    2 AALSGEMLYPVSEEGTGGTPLKLFVGQVPKDMDEDQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNP-DGTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVVKFADVKKTHTAKG----------WLVPDGRGVS 223
            AA+ G  LY  S  G    P+KLFVGQVP+ M+ED+LRP+ E  GP+  +++IRD+ T AHRGCAF +Y +R+A ++AV + HNKV LP + NP+QVRPA+ Q G                +E+KLF+GM+P  AD+  + +VF  FG I E+Y +R+P  G  KGCAF+KF  R++A+AAIE ++   TM+  T  LVVKFAD ++    +           W +P G G++
Sbjct:   13 AAVDGSDLYAESPNG----PVKLFVGQVPRTMEEDELRPVLEVFGPLEDLVIIRDKITGAHRGCAFASYFTRDAADQAVHELHNKVTLPQSINPLQVRPAEGQAG--------------ASQEHKLFIGMIPKTADEAAIRDVFELFGAIEEVYILRHPATGQSKGCAFLKFKERTSALAAIEDVNGNVTMDRGTSPLVVKFADSRRQRLQRARNLAAAANAYWPLPPGAGMA 227

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BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Match: A0A8K1CEG0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEG0_PYTOL)

HSP 1 Score: 188 bits (477), Expect = 1.080e-52
Identity = 92/188 (48.94%), Postives = 131/188 (69.68%), Query Frame = 0

Query:   21 PLKLFVGQVPKDMDEDQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNPD-GTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVVKFADVKK 207
            P+KLFVGQVP+ M+E+ LRP+ E  GP+  +++IRD+ T AHRGCAF ++ +REA E+A+E+ HNKV LPN+ NP+QVRPA+ Q G                +E+KLF+GM+P  AD++ + EVF+ FG I E+Y +R+P  G  KGCAF+K+  R +A+ AI+ ++   TME  T ALVVKFAD ++
Sbjct:   30 PIKLFVGQVPRTMEEEDLRPVLEVYGPLEDLVIIRDKLTGAHRGCAFASFYAREAAEKAIEELHNKVTLPNSINPLQVRPAEGQAG--------------ASQEHKLFIGMIPKTADEVAIREVFAPFGAIEEVYILRHPTTGISKGCAFLKYKDRQSALDAIQQVNGTVTMERGTSALVVKFADSRR 203

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BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Match: D0NNK0_PHYIT (CUG-BP-and ETR-3-like factor, putative n=17 Tax=Phytophthora TaxID=4783 RepID=D0NNK0_PHYIT)

HSP 1 Score: 187 bits (476), Expect = 1.850e-52
Identity = 97/214 (45.33%), Postives = 137/214 (64.02%), Query Frame = 0

Query:   21 PLKLFVGQVPKDMDEDQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNP-DGTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVVKFADVKKTHTAKG----------WLVPDGRGVS 223
            P+KLFVGQVP+ M+ED LRP+ E  GP+  +++IRD+ T AHRGCAF +Y +R+A E+AV++ HNKV LP + NP+QVRPA+ Q G                +E+KLF+GM+P  AD+  + +VF  FG I E+Y +R+P  G  KGCAF+KF  RS+A+AAIE ++   TM+  T  LVVKFAD ++    +           W +P G G++
Sbjct:   31 PVKLFVGQVPRTMEEDDLRPVLEVFGPLEDLVIIRDKITGAHRGCAFASYFTRDAAEKAVQELHNKVTLPQSINPLQVRPAEGQAG--------------ASQEHKLFIGMIPKTADEAAIRDVFELFGSIEEVYILRHPATGQSKGCAFLKFKERSSALAAIEEVNGIVTMDRGTSPLVVKFADSRRQRLQRARNLAAATNAYWPLPPGAGLA 230

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BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Match: D7FV60_ECTSI (Trinucleotide repeat containing 4, isoform CRA_d n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV60_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 3.480e-52
Identity = 118/277 (42.60%), Postives = 154/277 (55.60%), Query Frame = 0

Query:   22 LKLFVGQVPKDMDEDQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRPADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGEITEIYCMRNPDGTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVVKFADVKK-THTAKGWL-----VPDGRGVSPLGLNGGGMRH---GGSVGGY-----------WQATGAPGXXXXXGLRDVYGKGQGREVYPDYGRGGYP 278
            +KLFVGQ+PK M+E+ LRP+FE+ G I  + VIRD+ +  HRGCAFLTY +R + + A+   H + +L    NP+QVRPA+ Q                 ++ENKLFVGM P  A++  +  VF+ +G + EI+ +RN DGT KGCAFVK++TR +A+ AIEALHE+ TM+G  R LVVKFAD K+ T  A G L      P   G  P    GG M H   GG   GY              +G P      G +      QG  VY  YG  GYP
Sbjct:   44 IKLFVGQIPKHMEEEDLRPVFEEFGEIFDLAVIRDKISGLHRGCAFLTYCARVSADAAIAALHGQRRLDRGQNPLQVRPAEGQA----------------EQENKLFVGMAPKSANEDEIRAVFAPYGTLREIHVIRNQDGTNKGCAFVKYTTRQSALDAIEALHEQYTMQGGPRPLVVKFADNKRGTQAAAGRLGGLIGSPGRHGSGPHPEAGGWMGHPGAGGQGAGYPYPMPGPPMSPHMMSGMPYGMAYGGGQAPGAPAQGSYVYYPYGAPGYP 304

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig1311.2448.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LNL8_ECTSI	1.460e-125	86.21	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S3UU89_HETAK	3.550e-61	55.38	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A836CFQ8_9STRA	7.460e-60	59.36	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7R9U3N7_9STRA	3.140e-59	51.55	Hypothetical protein (Fragment) n=1 Tax=Pinguiococ...	[more]
A0A2P4XGI8_9STRA	1.140e-54	45.79	CUG-BP-and ETR-3-like factor (Fragment) n=1 Tax=Ph...	[more]
A0A5D6YER1_9STRA	4.970e-54	50.79	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
H3GY92_PHYRM	8.820e-54	43.78	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]
A0A8K1CEG0_PYTOL	1.080e-52	48.94	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
D0NNK0_PHYIT	1.850e-52	45.33	CUG-BP-and ETR-3-like factor, putative n=17 Tax=Ph...	[more]
D7FV60_ECTSI	3.480e-52	42.60	Trinucleotide repeat containing 4, isoform CRA_d n...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 23..99 e-value: 2.8E-18 score: 76.7 coord: 126..201 e-value: 5.1E-20 score: 82.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 127..190 e-value: 4.2E-16 score: 58.5 coord: 24..86 e-value: 1.6E-16 score: 59.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 22..103 score: 15.443
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 125..205 score: 16.023
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 119..212 e-value: 9.9E-26 score: 91.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 17..108 e-value: 5.7E-22 score: 79.8
None	No IPR available	PANTHER	PTHR24012:SF721	CUGBP ELAV-LIKE FAMILY MEMBER 4	coord: 17..212
None	No IPR available	PANTHER	PTHR24012	RNA BINDING PROTEIN	coord: 17..212
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 120..212
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 19..109

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig1311	contig	L-elsbetiae_contig1311:217..6885 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig1311.2448.1	mRNA_L-elsbetiae_contig1311.2448.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig1311 217..7103 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig1311.2448.1 ID=prot_L-elsbetiae_contig1311.2448.1|Name=mRNA_L-elsbetiae_contig1311.2448.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=286bp
MAALSGEMLYPVSEEGTGGTPLKLFVGQVPKDMDEDQLRPLFEQAGPIAH
IMVIRDRQTDAHRGCAFLTYQSREAGERAVEKFHNKVKLPNAHNPVQVRP
ADSQMGDDRLGPNGRVGVAPVDRENKLFVGMLPHDADDMTLTEVFSRFGE
ITEIYCMRNPDGTPKGCAFVKFSTRSAAIAAIEALHEKCTMEGATRALVV
KFADVKKTHTAKGWLVPDGRGVSPLGLNGGGMRHGGSVGGYWQATGAPGG
GGGGGLRDVYGKGQGREVYPDYGRGGYPYHNQQVS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf