prot_L-elsbetiae_contig13078.2429.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig13078.2429.1
Unique Name	prot_L-elsbetiae_contig13078.2429.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	109

Homology

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BLAST of mRNA_L-elsbetiae_contig13078.2429.1 vs. uniprot
Match: D7G8E5_ECTSI (Putative retinoblastoma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E5_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 2.390e-40
Identity = 86/110 (78.18%), Postives = 88/110 (80.00%), Query Frame = 0

Query:    1 STYSVCKVNSVTPEVTFKRIIEQYKQLAGAGGG-LTGGVGTPRLSVVKDILLVRGAPEGEAEASWVEEAGRRSPAGTGAGHLRQEERGDIIKFYNKVYIPAMKQFVLEFK 109
            STYSVCKVN VTPEVTFKRIIEQYKQLAGAGGG L+GGVGTPRLSVVKDILL RG  E         EAG     G GAG  +QEERGDIIKFYNKVYIPAMKQFVLEFK
Sbjct:  926 STYSVCKVNGVTPEVTFKRIIEQYKQLAGAGGGGLSGGVGTPRLSVVKDILLKRGHDE---------EAG-----GEGAGEPQQEERGDIIKFYNKVYIPAMKQFVLEFK 1021

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BLAST of mRNA_L-elsbetiae_contig13078.2429.1 vs. uniprot
Match: A0A6H5JHA1_9PHAE (RB_A domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA1_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 7.320e-39
Identity = 82/110 (74.55%), Postives = 83/110 (75.45%), Query Frame = 0

Query:    1 STYSVCKVNSVTPEVTFKRIIEQYKQLAGAGGG-LTGGVGTPRLSVVKDILLVRGAPEGEAEASWVEEAGRRSPAGTGAGHLRQEERGDIIKFYNKVYIPAMKQFVLEFK 109
            STYSVCKVN VTPEVTFKRIIEQYKQLAGAGGG L+GGVGTPRLSVVKDILL RG  EG                G G G   QEERGDIIKFYN VYIPAMKQFVLEFK
Sbjct: 1078 STYSVCKVNGVTPEVTFKRIIEQYKQLAGAGGGGLSGGVGTPRLSVVKDILLRRGHDEGAG-------------GGEGGGEPLQEERGDIIKFYNMVYIPAMKQFVLEFK 1174

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BLAST of mRNA_L-elsbetiae_contig13078.2429.1 vs. uniprot
Match: A0A5D6XSA8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XSA8_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.790e-12
Identity = 45/112 (40.18%), Postives = 58/112 (51.79%), Query Frame = 0

Query:    1 STYSVCKVNSVTPEVTFKRIIEQYKQLAGAGGG---LTGGVGTPRLSVVKDILLVRGAPEGEAEASWVEEAGRRSPAGTGAGHLRQEERGDIIKFYNKVYIPAMKQFVLEFK 109
            S Y VCKVN+V PEVTFKR+I+ YK+L     G   L GG  TP       + L RG+         ++                 + RGDIIKFYN+ YIP MK F+L+F+
Sbjct:  845 SLYGVCKVNNVRPEVTFKRVIDAYKKLHSQPAGTSSLHGGSATP-------VSLARGSSNDVIRNIKLD---------------ADDARGDIIKFYNRCYIPTMKVFMLQFQ 934

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BLAST of mRNA_L-elsbetiae_contig13078.2429.1 vs. uniprot
Match: A0A024GK70_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GK70_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.320e-11
Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = 0

Query:    1 STYSVCKVNSVTPEVTFKRIIEQYKQLAGAGGGL--TGGVGTPRLSVVKDILLVRGAPEGEAEASWVEEAGRRSPAGTGAGHLRQEERGDIIKFYNKVYIPAMKQFVLEFK 109
            S Y VCKVN + PEVTF+R+I+ YK+L      +   G +G+    +++ I LV      +A AS          + + A       RGDIIKFYNK +I AMK F+L+F+
Sbjct:  848 SLYGVCKVNLIKPEVTFRRVIDVYKKLQTPHWAIHRPGTIGSTASDIIRHIRLV------DASAS----------SNSSAAPRESVPRGDIIKFYNKCFITAMKVFLLQFQ 942

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BLAST of mRNA_L-elsbetiae_contig13078.2429.1 vs. uniprot
Match: F0WHE8_9STRA (Uncharacterized protein AlNc14C100G6011 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WHE8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 8.510e-11
Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 0

Query:    1 STYSVCKVNSVTPEVTFKRIIEQYKQLAGAGGGL--TGGVGTPRLSVVKDILLVRGAPEGEAEASWVEEAGRRSPAGTGAGHLRQEERGDIIKFYNKVYIPAMKQFVLEFK 109
            S Y VCKVN + PEVTF+R+IE YK+L      +   G  G+    +++ I LV  +   ++  +  E                   RGDIIKFYNK +I AMK F+L+F+
Sbjct:  844 SLYGVCKVNLIKPEVTFRRVIEVYKKLQTPHWAIHRPGTTGSTASDIIRHIRLVDASTSSKSSTAPRESV----------------PRGDIIKFYNKCFIAAMKVFLLQFQ 938

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BLAST of mRNA_L-elsbetiae_contig13078.2429.1 vs. uniprot
Match: K3WCJ4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCJ4_GLOUD)

HSP 1 Score: 66.6 bits (161), Expect = 1.590e-10
Identity = 42/110 (38.18%), Postives = 53/110 (48.18%), Query Frame = 0

Query:    1 STYSVCKVNSVTPEVTFKRIIEQYKQLAGAGG-GLTGGVGTPRLSVVKDILLVRGAPEGEAEASWVEEAGRRSPAGTGAGHLRQEERGDIIKFYNKVYIPAMKQFVLEFK 109
            S Y VCKVN V PEVTFKR+I+ YK+L       +  G  TP   V     ++R                           L  + RGDIIKFYN+ YIP MK F+L+F+
Sbjct:  922 SLYGVCKVNHVRPEVTFKRVIDCYKKLQHPQSTAINHGNSTPTSLVRNSNEIIRNIK------------------------LDDDSRGDIIKFYNRCYIPTMKVFMLQFQ 1007

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BLAST of mRNA_L-elsbetiae_contig13078.2429.1 vs. uniprot
Match: A0A2D4CF97_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CF97_PYTIN)

HSP 1 Score: 64.3 bits (155), Expect = 1.050e-9
Identity = 46/120 (38.33%), Postives = 56/120 (46.67%), Query Frame = 0

Query:    1 STYSVCKVNSVTPEVTFKRIIEQYKQL-----------AGAGGGLTGGVGTPRLSVVKDILLVRGAPEGEAEASWVEEAGRRSPAGTGAGHLRQEERGDIIKFYNKVYIPAMKQFVLEFK 109
            S Y VCKVN V PEVTFKRII+ YK+L           A +   L          V++DILL                  RRS             RGDIIKFYN+ +IP MK F+L+F+
Sbjct: 1621 SIYGVCKVNHVKPEVTFKRIIDAYKKLQTPHWSSNTNSAFSSASLARPSSQHNRDVIRDILL----------------DDRRS-------------RGDIIKFYNRCFIPTMKVFLLQFQ 1711

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BLAST of mRNA_L-elsbetiae_contig13078.2429.1 vs. uniprot
Match: A0A8K1CKQ6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CKQ6_PYTOL)

HSP 1 Score: 60.8 bits (146), Expect = 1.690e-8
Identity = 44/115 (38.26%), Postives = 56/115 (48.70%), Query Frame = 0

Query:    1 STYSVCKVNSVTPEVTFKRIIEQYKQLAGAGGGLTGGVGTPRLSVVKDILLVRGAPEGEAEASWVEEAGRRSPAGTGAGHLRQ------EERGDIIKFYNKVYIPAMKQFVLEFK 109
            S Y VCKVN V PEVTFKRII+ YK+L            TP+  +         A    A AS        S +      +R+        RGDIIKFYN+ +IP MK F+L+F+
Sbjct:  824 SLYGVCKVNHVKPEVTFKRIIDCYKKLQ-----------TPQWGIHGSSAHGNNAAAHAAFAS-------ASISRNSHDIIREIKLDDHNTRGDIIKFYNRCFIPTMKVFLLQFQ 920

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BLAST of mRNA_L-elsbetiae_contig13078.2429.1 vs. uniprot
Match: A0A7S2GB36_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GB36_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.600e-6
Identity = 36/109 (33.03%), Postives = 47/109 (43.12%), Query Frame = 0

Query:    1 STYSVCKVNSVTPEVTFKRIIEQYKQLAGAGGGLTGGVGTPRLSVVKDILLVRGAPEGEAEASWVEEAGRRSPAGTGAGHLRQEERGDIIKFYNKVYIPAMKQFVLEFK 109
            +TY +CK+  + PEV F  II +YK+L     GL           V  I+L                               + ERGDIIKFYNKVYIP MK  + +F+
Sbjct:   68 TTYGICKMKRLVPEVKFTTIIAKYKELRPCAKGL-----------VHHIVL-----------------------------HSESERGDIIKFYNKVYIPTMKIVLTQFQ 136

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BLAST of mRNA_L-elsbetiae_contig13078.2429.1 vs. uniprot
Match: A0A061S813_9CHLO (Retinoblastoma-like n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S813_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 3.340e-6
Identity = 38/103 (36.89%), Postives = 52/103 (50.49%), Query Frame = 0

Query:    1 STYSVCKVNSVTPEVTFKRIIEQYKQLAGAGGGLTGGVGTPRLSVVKDILLVRGAPEGEAEASWVEEAGRRSPAGTGAGHLRQEERGDIIKFYNKVYIPAMKQ 103
            S Y VCKV  +   VTFK +  QY++LAG+  G +GG    R  V + +++ R A +                       L+  E GDII FYNKV+IPAMK+
Sbjct:  827 SLYGVCKVLRLD-RVTFKEVTTQYRKLAGSAAGASGG---SRQDVFRSVVI-RFADQ----------------------TLQPAEVGDIITFYNKVFIPAMKE 902

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig13078.2429.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig13078.2429.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11


Match Name	E-value	Identity	Description
D7G8E5_ECTSI	2.390e-40	78.18	Putative retinoblastoma n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JHA1_9PHAE	7.320e-39	74.55	RB_A domain-containing protein n=2 Tax=Ectocarpus ...	[more]
A0A5D6XSA8_9STRA	2.790e-12	40.18	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
A0A024GK70_9STRA	1.320e-11	38.74	Uncharacterized protein n=2 Tax=Albugo candida Tax...	[more]
F0WHE8_9STRA	8.510e-11	36.94	Uncharacterized protein AlNc14C100G6011 n=1 Tax=Al...	[more]
K3WCJ4_GLOUD	1.590e-10	38.18	Uncharacterized protein n=1 Tax=Globisporangium ul...	[more]
A0A2D4CF97_PYTIN	1.050e-9	38.33	Uncharacterized protein n=1 Tax=Pythium insidiosum...	[more]
A0A8K1CKQ6_PYTOL	1.690e-8	38.26	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A7S2GB36_9STRA	2.600e-6	33.03	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A061S813_9CHLO	3.340e-6	36.89	Retinoblastoma-like n=1 Tax=Tetraselmis sp. GSL018...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002719	Retinoblastoma-associated protein, B-box	PFAM	PF01857	RB_B	coord: 1..102 e-value: 6.3E-13 score: 48.9
IPR028309	Retinoblastoma protein family	PANTHER	PTHR13742	RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED	coord: 2..108
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 81..108

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig13078	contig	L-elsbetiae_contig13078:3996..5065 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig13078.2429.1	mRNA_L-elsbetiae_contig13078.2429.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig13078 3996..5065 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig13078.2429.1 ID=prot_L-elsbetiae_contig13078.2429.1|Name=mRNA_L-elsbetiae_contig13078.2429.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
STYSVCKVNSVTPEVTFKRIIEQYKQLAGAGGGLTGGVGTPRLSVVKDIL
LVRGAPEGEAEASWVEEAGRRSPAGTGAGHLRQEERGDIIKFYNKVYIPA
MKQFVLEFK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002719	RB_B
IPR028309	RB_fam
IPR036915	Cyclin-like_sf